Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G05
         (920 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              68   1e-11
SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)           29   5.3  
SB_36417| Best HMM Match : MFS_1 (HMM E-Value=0.0037)                  29   7.0  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               28   9.2  

>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +2

Query: 233 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKC 400
           LVDP  ++RE C +KP+   +  +   C +RVNS+S T ETC +EL+D++H  D C
Sbjct: 372 LVDPMDAIRESCEEKPECSKLKLELSNCEERVNSKSSTTETCAQELLDFMHCRDHC 427


>SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 263 ECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELI 373
           EC +KP    MW +Y+   D++ SR +      +E I
Sbjct: 36  ECCRKPLVYYMWYRYERFEDKMKSRERYENEGNQEKI 72


>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
          Length = 1028

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 185 QTFCLKRNTILYSLILFFS-KRYLIYTACSLFLY 87
           + FCL+   +LY + L+ S K +L+Y  C L  Y
Sbjct: 668 ELFCLQSGPVLYHITLYRSTKAWLVYYKCGLPYY 701


>SB_36417| Best HMM Match : MFS_1 (HMM E-Value=0.0037)
          Length = 547

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 194 RICQTFCLKRNTILYSLILFFSKRYLIYT-ACSLFL--YFLSKIRLL 63
           RI   FC  +      L L+F+K ++ YT A +LF+  YF   + ++
Sbjct: 165 RILSGFCTNQKKTFLDLTLWFNKAFITYTIAVTLFMLGYFFPYVHMV 211


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 415 QVLGDAFVKNMDIVNEFFFTGFCSFRS-GVYTIIALLIFSPHV 290
           Q + ++FV+N +IVN+ FF       S   + ++++L+  PH+
Sbjct: 47  QHIDESFVENEEIVNDIFFAQQVIPNSCATHALLSVLLNCPHI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,799
Number of Sequences: 59808
Number of extensions: 262304
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)