Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G05
         (920 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15120.1 68414.m01805 ubiquinol-cytochrome C reductase comple...    46   3e-05
At2g01090.1 68415.m00015 ubiquinol-cytochrome C reductase comple...    38   0.012
At3g48710.1 68416.m05319 expressed protein putative protein - Ar...    32   0.61 

>At1g15120.1 68414.m01805 ubiquinol-cytochrome C reductase complex
           7.8 kDa protein, putative / mitochondrial hinge protein,
           putative similar to SP|P48504 Ubiquinol-cytochrome C
           reductase complex 7.8 kDa protein (EC 1.10.2.2)
           (Mitochondrial hinge protein) (CR7) {Solanum tuberosum};
           contains Pfam profile PF02320: Ubiquinol-cytochrome C
           reductase hinge protein
          Length = 69

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = +2

Query: 233 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKD 412
           +VDP++ L E C  KP       +YQ C  R+       + C  +  DY   +DKCV   
Sbjct: 6   VVDPKKYLEESC--KPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCVAPK 63

Query: 413 LFKRLK 430
           LF +LK
Sbjct: 64  LFAKLK 69


>At2g01090.1 68415.m00015 ubiquinol-cytochrome C reductase complex
           7.8 kDa protein, putative / mitochondrial hinge protein,
           putative similar to SP|P48504 Ubiquinol-cytochrome C
           reductase complex 7.8 kDa protein (EC 1.10.2.2)
           (Mitochondrial hinge protein) (CR7) {Solanum tuberosum};
           contains Pfam profile PF02320: Ubiquinol-cytochrome C
           reductase hinge protein
          Length = 62

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 233 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVT 406
           +VD ++   E C  KP       +YQ C  R+       + C  +  DY H +DKCV+
Sbjct: 6   VVDQKRYFEESC--KPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCVS 61


>At3g48710.1 68416.m05319 expressed protein putative protein -
           Arabidopsis thaliana, EMBL:AL078465.1
          Length = 462

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 293 MWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKR 424
           +W++ +E   R  ++ K  +  +E+LID+  VLD  V K   K+
Sbjct: 142 VWSEQEEEKQRAKAKEKLDKCIKEKLIDFCDVLDIPVNKSTVKK 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,056
Number of Sequences: 28952
Number of extensions: 183863
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)