Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G04
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   4e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.41 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 707 SPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGG-GXSPXPPPLXGISNSGVRSXPP 871
           +P  AP+   PVP P    G P PP  P G  G G  P PPP   +S  G R   P
Sbjct: 743 TPAPAPI---PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +2

Query: 710 PWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGISNSGVRSXPP 871
           P  A +V +P P P     IP PP  P    GG  P PPP  G++ +G    PP
Sbjct: 735 PPPAVIVPTPAPAP-----IPVPPPAP--IMGGPPPPPPP-PGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 722  PLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGISNSGV 856
            P + +P P P   + +P PP  P    G  S  PPPL   S   V
Sbjct: 1700 PQMSAPTPPPPPMS-VPPPPSAPPMPAGPPSAPPPPLPASSAPSV 1743


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = +2

Query: 680 TGLXKSQAVSPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPP 829
           TG   S A+ P   P   +P P P      P PP   S      SP  PP
Sbjct: 715 TGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSS-----ISPSMPP 759


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 764 GIPXPPFXPSGXGGGXSPXPPPLXGISNSGVRSXPPQ 874
           G P PP  P G      P PPP  G         P Q
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQ 43


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/54 (29%), Positives = 18/54 (33%)
 Frame = +2

Query: 710 PWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGISNSGVRSXPP 871
           P   P +  P   P  F G P  P  P   G    P  P     S S   + PP
Sbjct: 523 PMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPP 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,550
Number of Sequences: 5004
Number of extensions: 31789
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)