Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G04
(944 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 33 0.22
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.39
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.39
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.52
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.52
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.52
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.91
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 31 1.6
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.1
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 6.4
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 6.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.4
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 28 8.5
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 8.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 8.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.5
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 8.5
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGI 841
P P P +G P PP P GG P PPP G+
Sbjct: 565 PPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGL 599
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 33.1 bits (72), Expect = 0.30
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +2
Query: 695 SQAVSPWKAPLVRSPVPD----PCRFTGIPXPPFXPSGXGGGXSPXPPP-LXGISNSGVR 859
+ A++P A P P P T P PP PS G +P PPP L GI+
Sbjct: 459 NSAIAPINANAPPPPGPPSSLLPLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTN 518
Query: 860 SXPP 871
+ PP
Sbjct: 519 APPP 522
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Frame = +2
Query: 686 LXKSQAVSPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXG---ISNSGV 856
L + A P P + P+P P PP +P PPP+ G +S
Sbjct: 482 LINTNAPPPPPMPSINGHAPNPP-----PPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAP 536
Query: 857 RSXPPQXXGWGXXNPP 904
PP G PP
Sbjct: 537 TPPPPPPVGMANGGPP 552
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 761 TGIPXPPFXPSGXG---GGXSPXPPPLXGISNSGVRSXPP 871
T P PP P G +P PPP G++N G PP
Sbjct: 517 TNAPPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPP 556
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +2
Query: 761 TGIPXPPFXPS-GXGGGXSPXPPPL 832
TG P PP P G G P PPPL
Sbjct: 533 TGAPTPPPPPPVGMANGGPPPPPPL 557
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.39
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +2
Query: 656 SSRRWGXPTGLXKSQAVSPWKAPLVRSPVPDPCRFT-----GIPXPPFXPSGXGGGXSPX 820
SS W P + P P + P P P RF G+P PP GG P
Sbjct: 292 SSGMWPPPPPPPPGRTPGPPGMPGMPPP-PPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350
Query: 821 PPPLXGISNSGVRSXPP 871
PPP + G+ PP
Sbjct: 351 PPPRYPSAGPGMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.39
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +2
Query: 656 SSRRWGXPTGLXKSQAVSPWKAPLVRSPVPDPCRFT-----GIPXPPFXPSGXGGGXSPX 820
SS W P + P P + P P P RF G+P PP GG P
Sbjct: 302 SSGMWPPPPPPPPGRTPGPPGMPGMPPP-PPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360
Query: 821 PPPLXGISNSGVRSXPP 871
PPP + G+ PP
Sbjct: 361 PPPRYPSAGPGMYPPPP 377
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.52
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +2
Query: 722 PLVRSPVPDPCR--FTGIPXPPFXPSGXG--GGXSPXPPPLXGISNSGVRSXPPQXXGWG 889
P+ P P P TG P PP P G G P PPP G+ PP G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 890 XXNPP 904
PP
Sbjct: 768 CPPPP 772
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPP 829
P P P P PP P G GG P PPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGI 841
P+ P P P G P PP P G P PPP G+
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 792
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 822 PPPXXVSXIPGLGXXPPXXGGGVPXTPPXXP 914
PPP + I G PP GG P PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPX----PPFXPSGXGGGXSPXPPPLXGISNSGVRSXPP 871
P+ P P P G+P PP P GG P PPP G G PP
Sbjct: 737 PITGGPPPPPPP-GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.52
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +2
Query: 722 PLVRSPVPDPCR--FTGIPXPPFXPSGXG--GGXSPXPPPLXGISNSGVRSXPPQXXGWG 889
P+ P P P TG P PP P G G P PPP G+ PP G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 890 XXNPP 904
PP
Sbjct: 768 CPPPP 772
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPP 829
P P P P PP P G GG P PPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGI 841
P+ P P P G P PP P G P PPP G+
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 792
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 822 PPPXXVSXIPGLGXXPPXXGGGVPXTPPXXP 914
PPP + I G PP GG P PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPX----PPFXPSGXGGGXSPXPPPLXGISNSGVRSXPP 871
P+ P P P G+P PP P GG P PPP G G PP
Sbjct: 737 PITGGPPPPPPP-GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.52
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +2
Query: 722 PLVRSPVPDPCR--FTGIPXPPFXPSGXG--GGXSPXPPPLXGISNSGVRSXPPQXXGWG 889
P+ P P P TG P PP P G G P PPP G+ PP G
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 890 XXNPP 904
PP
Sbjct: 351 CPPPP 355
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPP 829
P P P P PP P G GG P PPP
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGI 841
P+ P P P G P PP P G P PPP G+
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 375
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 822 PPPXXVSXIPGLGXXPPXXGGGVPXTPPXXP 914
PPP + I G PP GG P PP P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPX----PPFXPSGXGGGXSPXPPPLXGISNSGVRSXPP 871
P+ P P P G+P PP P GG P PPP G G PP
Sbjct: 320 PITGGPPPPPPP-GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.91
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 792 RGXGGAFXXXPPPXXVSXIPGLGXXPPXXGGGVPXTPPXXPXXXGP 929
+G GG PPP PG P GG PP P GP
Sbjct: 401 QGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGP 446
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPP 829
P+P P RF +P P P+ +P PPP
Sbjct: 155 PIPQPPRFAEVPPIPDAPTNPPTTTTPPPPP 185
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXP--PPLXGISNSGVRSXPPQXXGWGXXNPP 904
P P ++ G P PP P G GG P PP G P Q G+G PP
Sbjct: 682 PPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPG-PPPPQQQRGYGYPPPP 738
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXP--PPLXGISNSGVRSXPPQXXGWGXXNPP 904
P P ++ G P PP P G GG P PP G P Q G+G PP
Sbjct: 682 PPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPG-PPPPQQQRGYGYPPPP 738
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/61 (37%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 728 VRSPV-PDPCRFTGIPXPPFXPSGXGGGXSPXPP-PLXGISNSGVRSXPPQXXGWGXXNP 901
V SP P P G P PP G GG P PP P N G P Q G G
Sbjct: 245 VNSPGGPGPAGPPGPPGPP-GQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGG 303
Query: 902 P 904
P
Sbjct: 304 P 304
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXG 838
P P P F G P PPF P P PP G
Sbjct: 337 PPPHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDG 370
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXG 838
P P P F G P PPF P P PP G
Sbjct: 337 PPPHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDG 370
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPP---FXPSGXGGGXSPXPPPLXGISNSGVRSXPPQXXG 883
P SP P P TG P PP P G P PPP G +G PPQ G
Sbjct: 267 PRTGSPPPPP---TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG-SLPPPQAGG 319
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 644 KNRXSSRRWGXPTGLXKSQAVSPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXP 823
+N +R P G PL S P P G P PP S P
Sbjct: 222 QNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Query: 824 PPLXGISNSGVRSXPPQXXGWGXXNPP 904
PP G S R+ P +PP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPP---FXPSGXGGGXSPXPPPLXGISNSGVRSXPPQXXG 883
P SP P P TG P PP P G P PPP G +G PPQ G
Sbjct: 288 PRTGSPPPPP---TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG-SLPPPQAGG 340
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 644 KNRXSSRRWGXPTGLXKSQAVSPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXP 823
+N +R P G PL S P P G P PP S P
Sbjct: 243 QNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Query: 824 PPLXGISNSGVRSXPPQXXGWGXXNPP 904
PP G S R+ P +PP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPP---FXPSGXGGGXSPXPPPLXGISNSGVRSXPPQXXG 883
P SP P P TG P PP P G P PPP G +G PPQ G
Sbjct: 273 PRTGSPPPPP---TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG-SLPPPQAGG 325
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 644 KNRXSSRRWGXPTGLXKSQAVSPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXP 823
+N +R P G PL S P P G P PP S P
Sbjct: 228 QNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Query: 824 PPLXGISNSGVRSXPPQXXGWGXXNPP 904
PP G S R+ P +PP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPP 314
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Frame = +3
Query: 696 PRXFPPGKLPSCALRFPTPAX---LPEYLXRLSXLRGXGGAFXXXPPPXXV--SXIPGLG 860
P+ FP +P P P+ +P + RG GA+ PPP + PG+
Sbjct: 118 PQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY---PPPRGYPPAPAPGVY 174
Query: 861 XXPPXXGGGVPXTPPXXPXXXGP 929
PP G P PP P GP
Sbjct: 175 MPPPGMPGAYP--PPRMPIGHGP 195
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Frame = +3
Query: 696 PRXFPPGKLPSCALRFPTPAX---LPEYLXRLSXLRGXGGAFXXXPPPXXV--SXIPGLG 860
P+ FP +P P P+ +P + RG GA+ PPP + PG+
Sbjct: 118 PQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY---PPPRGYPPAPAPGVY 174
Query: 861 XXPPXXGGGVPXTPPXXPXXXGP 929
PP G P PP P GP
Sbjct: 175 MPPPGMPGAYP--PPRMPIGHGP 195
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 740 VPDPCRFTGIPXPP-FXPSGXGGGXSPXPPPLXGISNSGVRSXPPQXXG 883
+P P F P P F P G G P PPP+ G+ PP G
Sbjct: 58 IPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFA---GGIPPPPPMMGG 103
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPPLXGISNS----GVRSXPPQXXGWG 889
P+ +P P GIP PP P GG P PP + GI G PP G G
Sbjct: 68 PVPNGFIPPPPGPGGIPPPP--PM-FAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLG 124
Query: 890 XXNPP 904
P
Sbjct: 125 VAPQP 129
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 722 PLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPP 826
P + +P P G P PP PSG G +P PP
Sbjct: 98 PPMMGGIPPPPPMFGAPPPPPPPSGL--GVAPQPP 130
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 795 GXGGAFXXXPPPXXVSXIPGLGXXPPXXGGGVPXTPPXXPXXXGP 929
G GA PP IP G P GGG P P P GP
Sbjct: 93 GGYGASQPAPPEKFPDGIPNGGNQPKFPGGGFPDGP--FPNGGGP 135
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 795 GXGGAFXXXPPPXXVSXIPGLGXXPPXXGGGVPXTPPXXPXXXGP 929
G GA PP IP G P GGG P P P GP
Sbjct: 93 GGYGASQPAPPEKFPDGIPNGGNQPKFPGGGFPDGP--FPNGGGP 135
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 780 LSXLRGXGGAFXXXPPPXXVSXIPGLGXXPPXXGGGVP 893
L +RG GG PPP P G PP GGG P
Sbjct: 1459 LGMMRGRGG-----PPPPRGMNSPMRGMPPPMRGGGPP 1491
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 822 PPPXXVSXIPGLGXXPPXXGGGVPXTPPXXP 914
PPP VS P PP G P P P
Sbjct: 123 PPPPAVSRPPAFPTPPPSVGSAAPSIQPPIP 153
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 789 LRGXGGAFXXXPPPXXVSXIPGLGXXPPXXGGGVPXTPP 905
+RG PPP S IP PP GG+P PP
Sbjct: 760 MRGGPVGVGVPPPPPPPSAIP----LPPRLQGGIPPPPP 794
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 692 KSQAVSPWKAPLVRSPVPDPCRFTGIPXPPFXPSGXGGGXSPXPPP 829
KSQ P AP +P P P P P S +P PPP
Sbjct: 9 KSQTTYPESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPP 54
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 737 PVPDPCRFTGIPXPPFXP-SGXGGGXSPXPPPLXGISNS-GVRSXPPQ 874
P P P PP P GG SP PPP + + RS PP+
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPR 158
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 789 LRGXGGAFXXXPPPXXVSXIPGLGXXPPXXGGGVPXTPP 905
+RG PPP S IP PP GG+P PP
Sbjct: 760 MRGGPVGVGVPPPPPPPSAIP----LPPRLQGGIPPPPP 794
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,042
Number of Sequences: 27780
Number of extensions: 260002
Number of successful extensions: 1090
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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