Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G03
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 43 7e-05
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 42 2e-04
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 41 2e-04
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 39 0.001
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 32 0.12
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 31 0.29
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 30 0.38
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 30 0.38
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.66
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.88
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.88
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 29 0.88
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 28 1.5
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 2.0
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 4.7
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 27 4.7
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 6.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 8.2
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 42.7 bits (96), Expect = 7e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 264 KIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGV 443
K ++VAI+G N+GKS+LIN + +R+I S + TT + + N ++ DT G+
Sbjct: 238 KGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGL 297
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 41.5 bits (93), Expect = 2e-04
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +3
Query: 240 HAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKI------CAASNKVHTTTKLVRAMCY 401
++ K + + V +IG PN GKS++IN +++R C A N TT L
Sbjct: 260 YSAKKKLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSLREVKL- 318
Query: 402 CNDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGV 536
D ++ +D+PG+V K +L ++ + S + D V V
Sbjct: 319 --DNKLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAV 361
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKIID-----RKICAASNKVHTTTKLVRAMCYCNDTQIVFLDT 434
V+V +G PN+GKS+++N + + K N T ++ + ND + LDT
Sbjct: 146 VYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDT 205
Query: 435 PGVVTDREQKKYNLPPSMLGSCHK 506
PG++T K ++ L C K
Sbjct: 206 PGIMTPSITKPEDMLKLSLVGCVK 229
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 38.7 bits (86), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +3
Query: 228 FQPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCN 407
F H++ K I V +IG PN+GKS++IN + +K+C + + TK+ + +
Sbjct: 301 FASLHSDKKQIS----VGLIGFPNAGKSSIINTLRKKKVCNVA-PIPGETKVWQYVALMK 355
Query: 408 DTQIVFLDTPGVV 446
+I +D PG+V
Sbjct: 356 --RIFLIDCPGIV 366
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVV 446
V IG P+ GKSTL+ ++ + AA+ + T T + + Y N +I LD PG++
Sbjct: 66 VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQY-NGAKIQILDLPGII 121
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 258 IGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCY 401
+G+ + + +G P+SGKST++N + D N TT + RA+ Y
Sbjct: 1 MGRDILIGFVGKPSSGKSTMLNALTD-ATAKTGNFPFTTIEPNRAIGY 47
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAA-SNKVHTTTKLVRAMCYCNDTQIVFLDTPG 440
VA++G+ ++GKSTL+N + ++K TTK + + N++ I+ +D G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGI-WLSKANNSPILVMDVEG 96
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = +3
Query: 246 ENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVF 425
+N + + + +IG+ +SGKS+++ I+ + + + T + + + DT I +
Sbjct: 256 DNNSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVHSADTAIPY 315
Query: 426 LDTPGV 443
+ GV
Sbjct: 316 GEFSGV 321
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 234 PQHAENKNIGKIVHVAIIGAPNSGKSTLINKII 332
P+ E N +VH+ + G +SGKST++ +I+
Sbjct: 166 PEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIM 198
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 273 HVAIIGAPNSGKSTLINKIIDRKICAASNK 362
+V ++G SGKSTL+N +++R + + K
Sbjct: 97 NVLVLGESGSGKSTLVNTLLNRDVYPPTQK 126
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 606 VQDMPSFLIINKVDKLVKSLFXPSCD 683
+ DMP L++NKVD+L+ L P D
Sbjct: 259 LHDMPIVLVLNKVDRLILELRLPPND 284
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKIIDR 338
V VA++G P +GKSTLI ++ R
Sbjct: 75 VIVAVMGPPGTGKSTLIKSLVRR 97
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.88
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 267 IVHVAIIGAPNSGKSTLIN 323
I + ++G PN+GKSTL+N
Sbjct: 236 ICEIGLVGLPNAGKSTLLN 254
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/124 (21%), Positives = 51/124 (41%)
Frame = +3
Query: 282 IIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQ 461
+ G PN GKS+ +NK+ ++ T + V Y + +DTPG++ D
Sbjct: 173 VCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDY-KYLRWQVIDTPGIL-DHPL 230
Query: 462 KKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSFLIINK 641
++ N + LR A + + C Y + K + + + L++NK
Sbjct: 231 EQMNTIEMQSITAMAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290
Query: 642 VDKL 653
+D +
Sbjct: 291 IDAM 294
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 273 HVAIIGAPNSGKSTLINKIIDR 338
HV ++G NSGKSTL+ + R
Sbjct: 211 HVYVVGEANSGKSTLLKTLAKR 232
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 261 GKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFL 428
G + + I+G PN GKSTL + + +N T V A D+Q L
Sbjct: 43 GNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELL 98
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 225 SFQPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKI 344
SF QH + N G ++V+ GAP +GK+ L++ ++D +
Sbjct: 181 SFFRQHLD-ANAGGALYVS--GAPGTGKTVLLHNVLDHVV 217
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Frame = +3
Query: 273 HVAIIGAPNSGKSTLINKIIDRKICAA------------SNKVHTTTKLVRAMCYCNDTQ 416
+V ++G SGKSTLIN + + + + ++H T+++VR Q
Sbjct: 34 NVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIHVTSQVVRENRV--QLQ 91
Query: 417 IVFLDTPG 440
+ +DTPG
Sbjct: 92 LNLIDTPG 99
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 4.7
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +3
Query: 261 GKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCN-DTQIVFLDTP 437
GKI A++GA SGKST+I +++R +V K +R + + QI +
Sbjct: 448 GKIT--ALVGASGSGKSTIIG-LVERFYDPIGGQVFLDGKDLRTLNVASLRNQISLVQQE 504
Query: 438 GVV---TDREQKKYNLPPSMLGSCHK 506
V+ T E Y LP ++ G+ K
Sbjct: 505 PVLFATTVFENITYGLPDTIKGTLSK 530
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 183 FSYRNMLPRRIVNYSFQPQHAENKNIGKIVHVAIIGAPNSGKSTL 317
F +N L R N S P H + +IV ++G P+SGKSTL
Sbjct: 233 FHPKNYLVR---NSSSHPYHFKKSEHQEIV--VLVGFPSSGKSTL 272
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 231 QPQHAENKNIGKIVHVAIIGAPNSGKSTLINKI 329
Q ++A K+ KI V ++GA +SGKST+ +I
Sbjct: 23 QIENASKKD-KKIYKVLLLGASDSGKSTISKQI 54
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 282 IIGAPNSGKSTLINKIIDRKICAASNKVHTTT 377
I+G P +GK+T I+ +I R + A K+ T+
Sbjct: 953 ILGMPGTGKTTTISSLI-RSLLAKKKKILLTS 983
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,372
Number of Sequences: 5004
Number of extensions: 58929
Number of successful extensions: 201
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -