Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G03
(881 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 9e-28
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 44 2e-04
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 42 5e-04
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 35 0.10
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05) 34 0.13
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7) 33 0.31
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 33 0.31
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061) 29 3.8
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0) 29 6.6
SB_28952| Best HMM Match : Dynamin_N (HMM E-Value=7.7e-09) 29 6.6
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16) 29 6.6
SB_52274| Best HMM Match : FtsJ (HMM E-Value=0) 29 6.6
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18) 28 8.7
SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06) 28 8.7
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 121 bits (291), Expect = 9e-28
Identities = 59/130 (45%), Positives = 87/130 (66%)
Frame = +3
Query: 264 KIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGV 443
K++ VAIIG PNSGKSTLIN+++ KI A + K HTT ++ R + TQI+ LDTPG+
Sbjct: 38 KLLKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGL 97
Query: 444 VTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPS 623
VT E K+ + + + +L AD++GV+ DAS K R+ +H+ V++ L ++PS
Sbjct: 98 VTQSEGKRLKMTREHIKAPGDALDDADIIGVICDASNKRTRDRIHQQVLQALEQHVNIPS 157
Query: 624 FLIINKVDKL 653
FLI+NK+DKL
Sbjct: 158 FLILNKIDKL 167
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDR 455
VA++G PN GKSTL+N+I+ R+ + T V + Q V +DT G +D
Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83
Query: 456 EQKKYNLPPSMLG 494
N P+ G
Sbjct: 84 SGMAANRIPAARG 96
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 240 HAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQI 419
+ NK+I + V ++G PN GKS++IN + + C T + D I
Sbjct: 446 YCRNKDIKTSITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQL---DKHI 502
Query: 420 VFLDTPGVVTD 452
LD+PG+V D
Sbjct: 503 KLLDSPGIVMD 513
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 42.3 bits (95), Expect = 5e-04
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDR 455
VA+IG P+ GKSTL+ K+ + AS + T T + + Y N I LD PG++
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINY-NGANIQLLDLPGIIEGA 124
Query: 456 EQKK 467
Q K
Sbjct: 125 AQGK 128
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 39.9 bits (89), Expect = 0.003
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Frame = +3
Query: 69 KHIKFLLFKINYTPKWL----FVIITIYH--IITMATITRGMCVFSYRNMLPRRIVNYSF 230
KH+ F+L K + P W+ +++ H + A++T + N+L + F
Sbjct: 105 KHLIFILNKCDLVPTWVTQQWVSVLSEEHPTLAFHASVTNPFGKGALINLLRQ------F 158
Query: 231 QPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCND 410
H++ K I V +IG PN GKS++IN + +K+C + + TK+ + +
Sbjct: 159 SKLHSDKKQIS----VGLIGYPNVGKSSIINTLKAKKVCKVA-PIAGETKVWQYITLMR- 212
Query: 411 TQIVFLDTPGVV 446
+I +D PGVV
Sbjct: 213 -RIYLVDCPGVV 223
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 34.7 bits (76), Expect = 0.10
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 186 SYRNMLPRRIVNYSFQPQHAEN--KNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASN 359
+Y++ + ++N Q + + + K + ++G NSGKS+LIN+++ +
Sbjct: 63 AYKDDMNSDVINAFISEQETQKFEEFVSKKAAILVVGQTNSGKSSLINELLGGTYLPTA- 121
Query: 360 KVHTTTKLVRAMCYCNDTQI 419
++ T+++VR +CY ++ +
Sbjct: 122 EIPCTSRIVR-ICYSDNNYV 140
>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
Length = 202
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 267 IVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVV 446
I V +IG N GKST +N ++ K ++ T+++VR + Y + +D G V
Sbjct: 63 IPSVIVIGNQNCGKSTFLNVLLKGKYLPV-HENPCTSRIVR-ISYSESNFVQLVDEAGNV 120
Query: 447 TDREQKKYNLP 479
RE+ K +P
Sbjct: 121 IQREKFKRKVP 131
>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
Length = 381
Score = 33.1 bits (72), Expect = 0.31
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 303 GKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIV 422
G S + ++ R +C + T T L+RA+CYC + IV
Sbjct: 64 GHSAITGTLLLRALCYYGHSAITGTLLLRALCYCGHSAIV 103
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVR 389
VA+IG P+ GKSTL+ K+ + AS + T T + R
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTGITR 103
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 31.5 bits (68), Expect = 0.93
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Frame = +3
Query: 282 IIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQ 461
+ G PN GKS+ +NK+ + T + V M Y + +DTPGV+ D
Sbjct: 88 VCGFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMDY-KYLRWQVVDTPGVL-DHPL 145
Query: 462 KKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDM----PSFL 629
++ N + LR A + C + E VE+ N+++ + P +
Sbjct: 146 EERNTIEMQAITALAHLRSAVLYVTDISEQCGHTLE----QQVELFNNIKPLFSNKPLIV 201
Query: 630 IINKVD 647
++NK+D
Sbjct: 202 VLNKID 207
>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = -1
Query: 311 TFS*IWGSNNRNMYDFTYVFIFSMLWLK*IINDTTREHITITKNTHPTSNRSHGYYVIYS 132
TF + SN+ Y FT F + K II TT + IT + TSNR+ +Y S
Sbjct: 64 TFHYTFTSNHTFHYTFTSSHTFHYAFTKAIIPSTTPSLVIITFHYAFTSNRTF-HYAFTS 122
Query: 131 NN 126
N+
Sbjct: 123 NH 124
>SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061)
Length = 152
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKI 344
VA++GA SGK+TLIN + R I
Sbjct: 51 VAVMGASGSGKTTLINVLAHRNI 73
>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASN-----KVHTTTKLVRAMCYCNDTQIVFLDTPG 440
+ I+G N+GK+TL+ + I RK C N K+ TT L + +++F D G
Sbjct: 24 ILILGLDNAGKTTLLEQ-IKRKFCKTYNGIPFEKITTTVGLNIGKITISHVKLMFWDLGG 82
>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1308
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKIC 347
VA+IGA SGK+TL++ I+ + C
Sbjct: 440 VAVIGAVGSGKTTLLSAILGQVSC 463
>SB_28952| Best HMM Match : Dynamin_N (HMM E-Value=7.7e-09)
Length = 323
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +3
Query: 282 IIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQ 461
+ G N GKS++IN+ + ++ K T + M Y + + G +R +
Sbjct: 129 VTGQTNCGKSSIINEFLGARV--VPTKAQPCTARIVRMTYSETPYVRLVKRDGTELERRE 186
Query: 462 KKYNLPP 482
K N P
Sbjct: 187 LKSNKIP 193
>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
Length = 1134
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 198 MLPRRIVNYSFQPQHAENKNI-GKIVHVAI-IGAPNSGKSTLINKIIDR 338
+L R + +++ + +N NI G IV ++ G P +GKST IN ++ R
Sbjct: 254 VLVRGVCERTYEKPNYQNTNIPGSIVSLSRGAGKPEAGKSTAINVMMTR 302
>SB_52274| Best HMM Match : FtsJ (HMM E-Value=0)
Length = 316
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 231 QPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCND 410
+P+ + N +I V P K T+ N ++D N + ++V C D
Sbjct: 187 KPRSSRNSSIESFVVCQGYAPPQGYKPTMSNPLLDSHQNPDFNSLEGVNRIVVPFLACGD 246
Query: 411 TQIVFLDTPGVVTDREQKKY-NLPPS 485
D + +E K+Y +LPP+
Sbjct: 247 LSAYDSDQTYKLDVQEGKEYTSLPPT 272
>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
Length = 2111
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 221 INDTTREHITITKNTHPTSNRSHGYYVIYSNNY 123
+N+T ITI++ T+ +N S GY VI + N+
Sbjct: 312 VNETITFTITISQGTNTRTNYSLGYDVISTRNF 344
>SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)
Length = 210
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKII 332
V VA++G P GK+TLIN ++
Sbjct: 81 VVVAVVGPPKVGKTTLINSLL 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,449,350
Number of Sequences: 59808
Number of extensions: 415152
Number of successful extensions: 1061
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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