Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G03
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical p... 40 0.002
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 38 0.007
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 38 0.007
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 37 0.017
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 37 0.017
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 37 0.017
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 36 0.029
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 36 0.051
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 36 0.051
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 36 0.051
Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical pr... 32 0.62
AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeri... 30 1.9
AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein, su... 30 1.9
AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alp... 30 1.9
AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s... 30 1.9
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z92829-13|CAB07344.2| 337|Caenorhabditis elegans Hypothetical p... 29 3.3
Z93393-2|CAB07689.2| 890|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 5.8
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z99281-53|CAB16519.2| 677|Caenorhabditis elegans Hypothetical p... 28 7.7
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 28 7.7
U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alph... 28 7.7
U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alph... 28 7.7
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 28 7.7
AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeri... 28 7.7
>Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 77.0 bits (181), Expect = 2e-14
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Frame = +3
Query: 264 KIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGV 443
K + +A+IGAPN GKS L N +I + A S+K+ TTT+ + A + TQ+VF+D+PG
Sbjct: 32 KCLQLAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNISASICSDSTQLVFVDSPGA 91
Query: 444 VTD---REQKKYNLPPS---MLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNS 605
V+ R+ K S +L ++L+ A V VV D++ +H V+ ML+
Sbjct: 92 VSTSHVRQTMKKTSATSGDRVLQDPERALQRAQHVLVVQDSTAP--GAYIHHRVLHMLHR 149
Query: 606 VQDMPSFLIINKVDKLVK 659
+PS L++NK+D +++
Sbjct: 150 YSHVPSILVMNKIDLVMR 167
>Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 77.0 bits (181), Expect = 2e-14
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Frame = +3
Query: 264 KIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGV 443
K + +A+IGAPN GKS L N +I + A S+K+ TTT+ + A + TQ+VF+D+PG
Sbjct: 32 KCLQLAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNISASICSDSTQLVFVDSPGA 91
Query: 444 VTD---REQKKYNLPPS---MLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNS 605
V+ R+ K S +L ++L+ A V VV D++ +H V+ ML+
Sbjct: 92 VSTSHVRQTMKKTSATSGDRVLQDPERALQRAQHVLVVQDSTAP--GAYIHHRVLHMLHR 149
Query: 606 VQDMPSFLIINKVDKLVK 659
+PS L++NK+D +++
Sbjct: 150 YSHVPSILVMNKIDLVMR 167
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +3
Query: 240 HAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQI 419
+ NK+I + V ++G PN GKS++IN + RK C N T ++ D I
Sbjct: 250 YCRNKDIKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGITKEIQEVEL---DKNI 306
Query: 420 VFLDTPGVV 446
+D+PGV+
Sbjct: 307 RLIDSPGVI 315
>Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical
protein F39B2.7 protein.
Length = 439
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/114 (25%), Positives = 53/114 (46%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDR 455
+ + G PNSGKS+++N++ + S+ TT + + N + DT GV R
Sbjct: 213 IVLYGRPNSGKSSILNQLAHDDVAIVSSIPGTTRDSLETIIQINGVRCRLTDTAGV---R 269
Query: 456 EQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDM 617
++ + + K ++ AD++ VV D + + DV +LN V+ M
Sbjct: 270 QKTNDVIEAEGIRRAQKRIQSADIICVVVDP-----QFTSDDDVESILNDVEVM 318
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 38.3 bits (85), Expect = 0.007
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Frame = +3
Query: 282 IIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQ 461
++G PN+GKS+L+ I K AS T + + Y + QI D PG++ D
Sbjct: 193 LVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYEDFEQIAVADIPGLIEDSHL 252
Query: 462 KKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEM---LNSVQDMPSFLI 632
K L S L K + + + V D S + + VE+ + D S ++
Sbjct: 253 NK-GLGISFL----KHIERCESLWYVLDYSTGSLTDQYKMLRVELEGYQKGLGDRASTIV 307
Query: 633 INKVDKLVKS 662
INK+D KS
Sbjct: 308 INKIDLSGKS 317
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVVTDR 455
VA++G P+ GKSTL++ + AA + T T + + Y N I LD PG++
Sbjct: 65 VAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTLTCIPGVISY-NGANIQLLDLPGIIEGA 123
Query: 456 EQKK 467
Q K
Sbjct: 124 SQGK 127
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVV 446
+ V IG PN GKS+L+N + +K+C + + TK+ + + +I +D+PGVV
Sbjct: 326 ISVGFIGYPNVGKSSLVNTLRKKKVCKTA-PIAGETKVWQYVMLMR--RIYLIDSPGVV 381
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVV 446
+ V IG PN GKS+L+N + +K+C + + TK+ + + +I +D+PGVV
Sbjct: 267 ISVGFIGYPNVGKSSLVNTLRKKKVCKTA-PIAGETKVWQYVMLMR--RIYLIDSPGVV 322
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQIVFLDTPGVV 446
+ V IG PN GKS+L+N + +K+C + + TK+ + + +I +D+PGVV
Sbjct: 326 ISVGFIGYPNVGKSSLVNTLRKKKVCKTA-PIAGETKVWQYVMLMR--RIYLIDSPGVV 381
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +3
Query: 249 NKNIGKIVHVAIIGAPNSGKSTLINKI------IDRKICAASNKVHTTTKLVRAMCYCND 410
N+ + ++G PN GKS+LIN I I RK A + T ++ + +
Sbjct: 109 NRTVKTEYQAMVVGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQNRVRILDK 168
Query: 411 TQIVFLDTPGVVT 449
+ +DTPGV++
Sbjct: 169 PPVYIIDTPGVLS 181
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 35.5 bits (78), Expect = 0.051
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 240 HAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQI 419
H ++ K V V ++G PN GKS+ INK+ K + S T K D+Q+
Sbjct: 120 HVSDEPSAKPVMVGMVGYPNVGKSSTINKLAGGKKVSVS---ATPGKTRHFQTIHIDSQL 176
Query: 420 VFLDTPGVV 446
D PG+V
Sbjct: 177 CLCDCPGLV 185
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 35.5 bits (78), Expect = 0.051
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 240 HAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQI 419
H ++ K V V ++G PN GKS+ INK+ K + S T K D+Q+
Sbjct: 120 HVSDEPSAKPVMVGMVGYPNVGKSSTINKLAGGKKVSVS---ATPGKTRHFQTIHIDSQL 176
Query: 420 VFLDTPGVV 446
D PG+V
Sbjct: 177 CLCDCPGLV 185
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 35.5 bits (78), Expect = 0.051
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +3
Query: 240 HAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYCNDTQI 419
H ++ K V V ++G PN GKS+ INK+ K + S T K D+Q+
Sbjct: 289 HVSDEPSAKPVMVGMVGYPNVGKSSTINKLAGGKKVSVS---ATPGKTRHFQTIHIDSQL 345
Query: 420 VFLDTPGVV 446
D PG+V
Sbjct: 346 CLCDCPGLV 354
>Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical
protein F46B6.4 protein.
Length = 468
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRAMCYC-NDTQIVFLDTPGVVTD 452
VA++G NSGK++L+ K+ +++ T R + + VF DT G ++D
Sbjct: 237 VAVVGYTNSGKTSLVKKLTGAASLTPKDQLFATLDTTRHLAKLPSGRSAVFTDTIGFLSD 296
>AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 210 RIVNYSFQPQHAENKNIGKIVH-VAIIGAPNSGKSTLINKI 329
R VN + Q A++K + + H + ++GA SGKST++ ++
Sbjct: 16 RKVNKQIEEQLAKDKQVMRATHRLLLLGAGESGKSTIVKQM 56
>AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein,
subunit alpha protein 1 protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 210 RIVNYSFQPQHAENKNIGKIVH-VAIIGAPNSGKSTLINKI 329
R VN + Q A++K + + H + ++GA SGKST++ ++
Sbjct: 16 RKVNKQIEEQLAKDKQVMRATHRLLLLGAGESGKSTIVKQM 56
>AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 210 RIVNYSFQPQHAENKNIGKIVH-VAIIGAPNSGKSTLINKI 329
R VN + Q A++K + + H + ++GA SGKST++ ++
Sbjct: 16 RKVNKQIEEQLAKDKQVMRATHRLLLLGAGESGKSTIVKQM 56
>AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s)
subunit protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 210 RIVNYSFQPQHAENKNIGKIVH-VAIIGAPNSGKSTLINKI 329
R VN + Q A++K + + H + ++GA SGKST++ ++
Sbjct: 16 RKVNKQIEEQLAKDKQVMRATHRLLLLGAGESGKSTIVKQM 56
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 273 HVAIIGAPNSGKSTLINKIIDRKICAASNKVHTT 374
++ ++G PN+GKSTL+ ++ K ++ TT
Sbjct: 163 NIGLLGFPNAGKSTLLKALVPEKSVKIADYAFTT 196
>Z92829-13|CAB07344.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.6 protein.
Length = 337
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 90 FKINYTPKWLFVIITIYHI-ITMATITRGMCVFSYRNMLPRRIVNYSFQPQ 239
F + TP W+ II+I + +M G N LP NY +P+
Sbjct: 127 FSVKSTPIWILFIISISFLWFSMCYFVNGPSPMKDENFLPEFQKNYCMEPE 177
>Z93393-2|CAB07689.2| 890|Caenorhabditis elegans Hypothetical
protein Y48E1B.2a protein.
Length = 890
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 249 NKNIGKIVHVAIIGAPNSGKSTLINKIIDRKIC 347
N +G + ++G N+GKST+ N ++ +C
Sbjct: 498 NVKLGMRGDIFLVGCTNAGKSTMFNALLQSDLC 530
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 447 TDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNS 605
TDR ++ + +CH LR D V +VH I +S +K V NS
Sbjct: 91 TDRRRRLQGVARDCGHACHLRLRSDDAVYIVHLHRWNQIPDSHNKSVPHFSNS 143
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 447 TDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNS 605
TDR ++ + +CH LR D V +VH I +S +K V NS
Sbjct: 91 TDRRRRLQGVARDCGHACHLRLRSDDAVYIVHLHRWNQIPDSHNKSVPHFSNS 143
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 186 SYRNMLPRRIVNYSFQPQHAENKNIGK--IVHVAIIGAPNSGKSTLINKIIDRKICAASN 359
S R + RI ++ F+ E+ GK ++ + ++G G++ +I+KI++ + A
Sbjct: 280 SDRGEIEGRIDHHQFEKILDEDLAAGKKPLILIGVVGTTIMGQNDMISKILEIREKKAKF 339
Query: 360 KVHTTTKLVRAMCYCNDTQIV 422
+H T + + A+ + I+
Sbjct: 340 WLHITGQAIAALTFREPNNIL 360
>Z99281-53|CAB16519.2| 677|Caenorhabditis elegans Hypothetical
protein Y57G11C.18 protein.
Length = 677
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 267 IVHVAIIGAPNSGKSTLINKIID 335
+ +IIGA SGK+TL+ KI++
Sbjct: 175 LAQTSIIGATQSGKTTLLRKILE 197
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 264 KIVHVAIIGAPNSGKSTLINKI 329
K V++ ++G NSGK+T++N++
Sbjct: 16 KDVNIVVVGLDNSGKTTILNQL 37
>U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform a protein.
Length = 368
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 246 ENKNIGKIVHVAIIGAPNSGKSTLINKI 329
E K G + + I+G P SGKST+ ++
Sbjct: 25 EKKTYGSHIKILILGGPLSGKSTIFKQM 52
>U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform b protein.
Length = 408
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 246 ENKNIGKIVHVAIIGAPNSGKSTLINKI 329
E K G + + I+G P SGKST+ ++
Sbjct: 65 EKKTYGSHIKILILGGPLSGKSTIFKQM 92
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 276 VAIIGAPNSGKSTLINKIIDRKICAASNKVHTTTKLVRA---MCYCNDTQIVFLDTPGVV 446
V +IGAP +GKST + D I + + + T L A M Y D I + T V
Sbjct: 4 VLVIGAPGAGKSTFCAGLTD--IFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVNDV 61
Query: 447 TDR 455
DR
Sbjct: 62 MDR 64
>AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 368
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 246 ENKNIGKIVHVAIIGAPNSGKSTLINKI 329
E K G + + I+G P SGKST+ ++
Sbjct: 25 EKKTYGSHIKILILGGPLSGKSTIFKQM 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,815
Number of Sequences: 27780
Number of extensions: 333016
Number of successful extensions: 890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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