Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G03
(881 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 27 0.17
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 27 0.17
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 27 0.17
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.6
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 2.1
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 24 2.1
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 24 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 4.9
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 8.6
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 27.5 bits (58), Expect = 0.17
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 147 ITMATITRGMCV-FSYRNMLPRRIVNY--SFQPQHAENKNIGKI-VHVAIIGAPNSGKST 314
+T + G+C+ F Y ++L VNY +P H G+ V G P +G +T
Sbjct: 360 LTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQKREGGPPTGATT 419
Query: 315 LINKIIDRKICAASNKVHTTT 377
N+I+ C + HTTT
Sbjct: 420 GPNEIVTCTNCGPNPCTHTTT 440
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 27.5 bits (58), Expect = 0.17
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 147 ITMATITRGMCV-FSYRNMLPRRIVNY--SFQPQHAENKNIGKI-VHVAIIGAPNSGKST 314
+T + G+C+ F Y ++L VNY +P H G+ V G P +G +T
Sbjct: 380 LTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQKREGGPPTGATT 439
Query: 315 LINKIIDRKICAASNKVHTTT 377
N+I+ C + HTTT
Sbjct: 440 GPNEIVTCTNCGPNPCTHTTT 460
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 27.5 bits (58), Expect = 0.17
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 147 ITMATITRGMCV-FSYRNMLPRRIVNY--SFQPQHAENKNIGKI-VHVAIIGAPNSGKST 314
+T + G+C+ F Y ++L VNY +P H G+ V G P +G +T
Sbjct: 329 LTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVVYRPGENPVTQKREGGPPTGATT 388
Query: 315 LINKIIDRKICAASNKVHTTT 377
N+I+ C + HTTT
Sbjct: 389 GPNEIVTCTNCGPNPCTHTTT 409
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 1.6
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 2/150 (1%)
Frame = +3
Query: 186 SYRNMLPRRIVNYSFQPQHAENKNIGKIVHVAIIGAPNSGKSTLINKIIDRKICAASNKV 365
S + M P + Y F P + + +++ +IG P++G I ++ + N
Sbjct: 816 SSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFLIPEQTSISHENNQ 875
Query: 366 HTTTKLVRAMCYCNDTQIVFLDTPGVVTDREQKKYNLPP-SMLGSC-HKSLRCADVVGVV 539
T K + V + ++ E K L P +L SC C+ +V V
Sbjct: 876 PTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVDVS 935
Query: 540 HDASCKYIRESLHKDVVEMLNSVQDMPSFL 629
+ K +++ + +V+ +S SFL
Sbjct: 936 TPVNKKVYKQNDY--IVDESSSSSFYSSFL 963
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 209 TREHITITKNTHPTSNRSHG 150
T E ++ NTH N+SHG
Sbjct: 679 TTEKLSTDPNTHFQVNQSHG 698
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 288 GAPNSGKSTLINKIIDRKICAASNKVHTTT 377
G P +G +T N+I+ C + HTTT
Sbjct: 397 GGPPTGATTGPNEIVTCTNCGPNPCTHTTT 426
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 215 DTTREHITITKNTHPTSNRSHGYYVIYSNNYK 120
+ ++EH I+ ++ + ++ Y +Y NNYK
Sbjct: 74 EKSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 215 DTTREHITITKNTHPTSNRSHGYYVIYSNNYK 120
+ ++EH I+ ++ + ++ Y +Y NNYK
Sbjct: 74 EKSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 528 VGVVHDASCKYIRESLHKDVVEM 596
V V HD SC Y+ + K +M
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKM 113
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 528 VGVVHDASCKYIRESLHKDVVEM 596
V V HD SC Y+ + K +M
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKM 113
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -1
Query: 215 DTTREHITITKNTHPTSNRSHGYYVIYSNNYK 120
+ ++EH I+ ++ + ++ Y +Y NNY+
Sbjct: 74 EKSKEHKIISSLSNNYNYNNNNYKKLYCNNYR 105
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKII 332
+++ +IG +SGKST +I
Sbjct: 8 INIVVIGHVDSGKSTTTGHLI 28
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 528 VGVVHDASCKYIRESLHKDVVEM 596
V V HD SC Y+ + K ++
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKI 113
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 528 VGVVHDASCKYIRESLHKDVVEM 596
V V HD SC Y+ + K ++
Sbjct: 91 VVVTHDGSCLYVPPGIFKSTCKI 113
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 270 VHVAIIGAPNSGKSTLINKII 332
+++ +IG +SGKST +I
Sbjct: 8 INIVVIGHVDSGKSTTTGHLI 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,756
Number of Sequences: 438
Number of extensions: 5039
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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