Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G02
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0006 + 7274148-7274986,7275636-7277586 35 0.068
08_01_1086 - 11150017-11151564 33 0.27
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690... 33 0.27
02_02_0537 + 11308195-11309667 32 0.63
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 31 0.84
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 31 0.84
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 31 0.84
01_05_0645 - 23899579-23904483 31 0.84
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 29 3.4
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 3.4
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 3.4
07_03_1210 + 24903389-24903695,24904383-24904468,24904545-249046... 28 7.8
>11_02_0006 + 7274148-7274986,7275636-7277586
Length = 929
Score = 35.1 bits (77), Expect = 0.068
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 406 QDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKE-SHSENSGTS 582
++ H +I T KS G DE V Q K +D+ NL+ + S ENS +
Sbjct: 303 KNNHASRIIT--TTRIKSVGQFCCTSDEGFVYQMKPLTKSDSENLFLKRTFSSEENSPSQ 360
Query: 583 TQDTVPKIIYVQTDGL 630
Q+ + KI+Y + DGL
Sbjct: 361 LQEVINKILY-KCDGL 375
>08_01_1086 - 11150017-11151564
Length = 515
Score = 33.1 bits (72), Expect = 0.27
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 355 PEHRDPQ-DYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAF 519
P H D DY R QDK L + S + T + D+ ++S D VAF
Sbjct: 86 PHHEDRLLDYREEKSRDGQDK----LPMEVEQSMATDKNTKVFSDKILISADPASSMVAF 141
Query: 520 TNDNGNLYQSKESHSENSGTSTQDTVPKIIYV 615
+ NL QS + +S T DT+P+ Y+
Sbjct: 142 HININNLLQSFPHNKPSSSTKRHDTIPQTPYI 173
>03_06_0517 +
34466743-34466879,34468478-34468588,34468997-34469079,
34469287-34469404,34469503-34469714,34470167-34470651,
34470731-34470801,34470898-34470955,34471161-34471192,
34471193-34471449,34471820-34471974,34472353-34472636,
34472725-34472842,34473574-34473756,34473848-34474162
Length = 872
Score = 33.1 bits (72), Expect = 0.27
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Frame = +1
Query: 301 RNHKVPHDLRNVENPSQRPEHRDPQDYSALNE--RKSQDKHTENLIPNLTNSHKSYGYTG 474
R+H HD + + H + QD +NE ++SQ + T + +S K
Sbjct: 182 RSHPDVHDSSIAKKAASEESHPNIQDKPVVNESSKESQSRSTNDSTTRGVDSMKH----- 236
Query: 475 IDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTDGLQDNQLYQV 654
K+E + S+ +N ++ + S + +S T +VQ LQ ++
Sbjct: 237 ASKEEPVESKPNSTRGQENMDVLNNLNSTDAGNNSSLSTTTENASHVQRRLLQTDEKSNQ 296
Query: 655 AGSS 666
AGSS
Sbjct: 297 AGSS 300
>02_02_0537 + 11308195-11309667
Length = 490
Score = 31.9 bits (69), Expect = 0.63
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Frame = +1
Query: 313 VPHDLRNVENPSQR---PEHRDPQ-DYSALNERKSQDKHTENLIPNLTNSHKSYGYTGID 480
VP D + E ++ P H + DY R QDK L + S + T +
Sbjct: 69 VPSDQKITEKRAKLQDIPHHEERLLDYREEKSRDGQDK----LPMEVEQSMATDKNTKVF 124
Query: 481 KDESIVSQDK----VAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYV 615
D+ ++S D VAF + NL QS + +S T DT+P+ Y+
Sbjct: 125 SDKILISTDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 173
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 31.5 bits (68), Expect = 0.84
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 388 LNERKSQDKHTENLIP-NLTNSHKSYGYTGIDKDESIVSQDK----VAFTNDNGNLYQSK 552
L+ R+ + + ++++P + S + T + D+ ++S D VAF + NL QS
Sbjct: 1083 LDYREEKSRDGQDILPMEVEQSMATDKNTKVFSDKILISADPASSMVAFHININNLLQSF 1142
Query: 553 ESHSENSGTSTQDTVPKIIYV 615
+ +S T DT+P+ Y+
Sbjct: 1143 PHNKPSSSTKRHDTIPQTPYI 1163
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 31.5 bits (68), Expect = 0.84
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 355 PEHRDPQ-DYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAF 519
P H + DY R QDK L + S + T + D+ ++S D VAF
Sbjct: 687 PHHEERLLDYREEKSRDGQDK----LPMEVEQSMATDKNTKVFSDKILISADPASSMVAF 742
Query: 520 TNDNGNLYQSKESHSENSGTSTQDTVPKIIYV 615
+ NL QS + +S T DT+P+ Y+
Sbjct: 743 HININNLLQSFPHNKPSSSTKRHDTIPQTPYI 774
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 31.5 bits (68), Expect = 0.84
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 355 PEHRDPQ-DYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAF 519
P H + DY R QDK L + S + T + D+ ++S D VAF
Sbjct: 928 PHHEERLLDYREEKSRDGQDK----LPMEVEQSMATDKNTKVFSDKILISTDPASSMVAF 983
Query: 520 TNDNGNLYQSKESHSENSGTSTQDTVPKIIYV 615
+ NL QS + +S T DT+P+ Y+
Sbjct: 984 HININNLLQSFPHNKPSSSTKRHDTIPQTPYI 1015
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 31.5 bits (68), Expect = 0.84
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 355 PEHRDPQ-DYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK----VAF 519
P H + DY R QDK L + S + T + D+ ++S D VAF
Sbjct: 1205 PHHEEMLLDYREEKSRDGQDK----LPMEVEQSMATDKNTKVFSDKILISTDPASSMVAF 1260
Query: 520 TNDNGNLYQSKESHSENSGTSTQDTVPKIIYV 615
+ NL QS + +S T DT+P+ Y+
Sbjct: 1261 HININNLLQSFPHNKPSSSTKRHDTIPQTPYI 1292
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 364 RDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 528
++PQ AL+E D +EN + L++S + T D +E + + D N+
Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +1
Query: 343 PSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGY---TGIDKDESI---VSQ 504
P P +DP + N+ + +KH ++ PN + K +G+ I E + ++Q
Sbjct: 112 PRPLPPSQDPLEGQE-NQNQEHEKHFAHVAPNFNSMRKDHGFPRDDPIPHSEHLNNDLTQ 170
Query: 505 DKVAFTNDNGNLYQSKESHSENSGTSTQDTVP 600
D VA + KE H NS +S+ ++P
Sbjct: 171 DPVASKKPK---VRKKEIH--NSASSSDPSIP 197
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 295 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNL 441
ER++ K DL++++ ++ E + +D S ++E + + + +LIP L
Sbjct: 393 ERKDVKYREDLKHLKQKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQL 441
>07_03_1210 +
24903389-24903695,24904383-24904468,24904545-24904649,
24904737-24905531,24905719-24905941,24906318-24906712
Length = 636
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 316 PHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHT 420
P +L +VE P R Q+ +A+ S+DK T
Sbjct: 552 PDNLTSVERPDSRNSAMSDQELAAIQTNSSEDKQT 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,544,785
Number of Sequences: 37544
Number of extensions: 391840
Number of successful extensions: 825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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