Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G02
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 34 0.14
U00043-11|AAN65290.1| 641|Caenorhabditis elegans Hypothetical p... 33 0.25
U00043-10|AAC77505.1| 779|Caenorhabditis elegans Hypothetical p... 33 0.25
Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical p... 32 0.57
Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical p... 32 0.57
Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical pr... 32 0.57
Z81017-8|CAC70094.2| 988|Caenorhabditis elegans Hypothetical pr... 32 0.57
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr... 32 0.57
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein. 32 0.57
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 32 0.57
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 32 0.57
AY288941-1|AAP44084.1| 987|Caenorhabditis elegans EGL-15 protein. 32 0.57
AC006607-1|AAY44022.1| 208|Caenorhabditis elegans Hypothetical ... 32 0.57
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 31 1.3
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 31 1.3
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 31 1.3
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ... 30 2.3
Z48621-2|CAA88547.1| 536|Caenorhabditis elegans Hypothetical pr... 29 4.0
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 29 5.3
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 29 5.3
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 29 5.3
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 29 5.3
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 29 5.3
Z92831-6|CAB07365.2| 355|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical p... 28 7.0
Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical pr... 28 9.3
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 28 9.3
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 33.9 bits (74), Expect = 0.14
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Frame = +1
Query: 289 IIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQD--KHTENLIPN-LTNSHKS 459
+ E++N V ++N +Q QD+ ++ K +D + T +P L
Sbjct: 638 LAEKQN--VQQSKSQLQNHTQNQSQNQSQDHEKNSKTKPKDPKQGTRLFVPKALRKEADD 695
Query: 460 YGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSE--NSGTSTQDTVPKIIYVQTDG 627
G+ +S+ +++K+A NG++++S E +S T T+PK + + +G
Sbjct: 696 LPANGLLSPQSVETKEKIAAAKSNGDVFKSDEQSKGFWDSLTPEVSTIPKKMTKKPEG 753
>U00043-11|AAN65290.1| 641|Caenorhabditis elegans Hypothetical
protein T26A5.2b protein.
Length = 641
Score = 33.1 bits (72), Expect = 0.25
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Frame = +1
Query: 304 NHKVPHDLRNVENPS---QRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTG 474
++KVP L++V P Q R Q A++ + EN++ +L N HK +
Sbjct: 487 SNKVP--LQSVSEPKILLQDTNSRCAQPRKAVSHEGLKSHQQENVLKHLDNKHKFLCFVN 544
Query: 475 IDKDESIVSQDKVAFTNDNGN-LYQSKESHSENSGTSTQDTVP-KIIYVQTDGLQDNQLY 648
I K NDNGN L + EN G Q P I + TDGL+ ++
Sbjct: 545 IAK----------RIENDNGNPLVELSIGFDENGGKVQQSPWPLGIRMLLTDGLEKTEV- 593
Query: 649 QVAGSSGDS 675
++ G D+
Sbjct: 594 KIQGDVQDT 602
>U00043-10|AAC77505.1| 779|Caenorhabditis elegans Hypothetical
protein T26A5.2a protein.
Length = 779
Score = 33.1 bits (72), Expect = 0.25
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Frame = +1
Query: 304 NHKVPHDLRNVENPS---QRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTG 474
++KVP L++V P Q R Q A++ + EN++ +L N HK +
Sbjct: 625 SNKVP--LQSVSEPKILLQDTNSRCAQPRKAVSHEGLKSHQQENVLKHLDNKHKFLCFVN 682
Query: 475 IDKDESIVSQDKVAFTNDNGN-LYQSKESHSENSGTSTQDTVP-KIIYVQTDGLQDNQLY 648
I K NDNGN L + EN G Q P I + TDGL+ ++
Sbjct: 683 IAK----------RIENDNGNPLVELSIGFDENGGKVQQSPWPLGIRMLLTDGLEKTEV- 731
Query: 649 QVAGSSGDS 675
++ G D+
Sbjct: 732 KIQGDVQDT 740
>Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical
protein F58A3.2c protein.
Length = 1158
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 717 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 773
>Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical
protein F58A3.2e protein.
Length = 1051
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 717 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 773
>Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical
protein F58A3.2d protein.
Length = 1096
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 717 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 773
>Z81017-8|CAC70094.2| 988|Caenorhabditis elegans Hypothetical
protein F58A3.2b protein.
Length = 988
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 665 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 721
>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
protein F58A3.2a protein.
Length = 1040
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 717 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 773
>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
Length = 1040
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 717 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 773
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +1
Query: 337 ENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVA 516
E+PS+ H DP++ ++E + + + N +L N S G+D ++ + +V
Sbjct: 159 EDPSEDTGHDDPEETQEISE--TPIRRSRNRNASLRNRQSSRSLGGLDFEKLRMGTARVG 216
Query: 517 FTN----DNGNLYQSKESHSENSG-TSTQDTV 597
+N +NG S +S + G TS+ TV
Sbjct: 217 DSNEATAENGTSSSSSRKNSRDDGLTSSPTTV 248
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +1
Query: 337 ENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVA 516
E+PS+ H DP++ ++E + + + N +L N S G+D ++ + +V
Sbjct: 37 EDPSEDTGHDDPEETQEISE--TPIRRSRNRNASLRNRQSSRSLGGLDFEKLRMGTARVG 94
Query: 517 FTN----DNGNLYQSKESHSENSG-TSTQDTV 597
+N +NG S +S + G TS+ TV
Sbjct: 95 DSNEATAENGTSSSSSRKNSRDDGLTSSPTTV 126
>AY288941-1|AAP44084.1| 987|Caenorhabditis elegans EGL-15 protein.
Length = 987
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 286 LIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSA-LNERKSQDKHTENLIPNLTNSH 453
+++E H D P + + Q+ + L RK+ DK LIPNLT H
Sbjct: 664 VVVELCKHGNLRDFLRAHRPKEEKAKKSSQELTDYLEPRKASDKDDIELIPNLTQRH 720
>AC006607-1|AAY44022.1| 208|Caenorhabditis elegans Hypothetical
protein C09E7.10 protein.
Length = 208
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +1
Query: 316 PHDLRNVENPSQRPEHR--DPQDYSALNERKSQDKHTENLI--PNLTNSHKSYGYTGIDK 483
P NV ++P+ + DP + L E +D H +I + + H YG T DK
Sbjct: 62 PEKENNVTLEKEKPKQKLIDPSTFITLKENDWRDAHEGRMIIWSHESQHHPDYGKTFTDK 121
Query: 484 DESIVSQDK 510
D Q K
Sbjct: 122 DRYTYRQSK 130
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 343 PSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKV 513
P Q ++ + YSA + K T N+I HK G++ + +DE ++ + +
Sbjct: 344 PKQNNGYQRQRRYSASSASKQDGMFTLNVIMGSQPVHKGMGFSTVKRDERVIVESVI 400
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 343 PSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKV 513
P Q ++ + YSA + K T N+I HK G++ + +DE ++ + +
Sbjct: 299 PKQNNGYQRQRRYSASSASKQDGMFTLNVIMGSQPVHKGMGFSTVKRDERVIVESVI 355
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 343 PSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKV 513
P Q ++ + YSA + K T N+I HK G++ + +DE ++ + +
Sbjct: 394 PKQNNGYQRQRRYSASSASKQDGMFTLNVIMGSQPVHKGMGFSTVKRDERVIVESVI 450
>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
protein C42C1.4a protein.
Length = 1259
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +1
Query: 307 HKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKD 486
H P D R + +Q P + LN+RK +D L N T + S G GI K+
Sbjct: 812 HVTPDDKRRIIRAAQNPMRPTILSFLYLNDRKFEDLIKCYLESNSTEVYSSIG--GILKE 869
Query: 487 ESIVSQDKVAF 519
+ + F
Sbjct: 870 AELTDDESAEF 880
>Z48621-2|CAA88547.1| 536|Caenorhabditis elegans Hypothetical
protein R07B1.3 protein.
Length = 536
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 322 DLRNVENPSQ------RPEHRDPQDYSAL-NERKSQDKHTENLIPNLTNSHKSYGYTGID 480
+L NV NP + +PE + Y+ L +E+K + + + ++K Y Y+ +D
Sbjct: 70 NLFNVTNPDEVKYLGAKPELIEVGGYAFLESEQKKYYEFSSDKTKMFYQNYKQYHYSEVD 129
Query: 481 KDESIVSQDKVAFTN 525
D DK+ F N
Sbjct: 130 NDAGYNYNDKIMFPN 144
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 250 PGGSYNIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
PG S + P + + R NH D RN E+ +R + RD + L +K + +
Sbjct: 32 PGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD--ELERLRNKKHTTEEEKIK 89
Query: 430 IPNLTNSHKSYG 465
+ L N+ K G
Sbjct: 90 MARLQNALKVVG 101
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 250 PGGSYNIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
PG S + P + + R NH D RN E+ +R + RD + L +K + +
Sbjct: 47 PGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD--ELERLRNKKHTTEEEKIK 104
Query: 430 IPNLTNSHKSYG 465
+ L N+ K G
Sbjct: 105 MARLQNALKVVG 116
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 250 PGGSYNIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
PG S + P + + R NH D RN E+ +R + RD + L +K + +
Sbjct: 144 PGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD--ELERLRNKKHTTEEEKIK 201
Query: 430 IPNLTNSHKSYG 465
+ L N+ K G
Sbjct: 202 MARLQNALKVVG 213
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 250 PGGSYNIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
PG S + P + + R NH D RN E+ +R + RD + L +K + +
Sbjct: 146 PGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD--ELERLRNKKHTTEEEKIK 203
Query: 430 IPNLTNSHKSYG 465
+ L N+ K G
Sbjct: 204 MARLQNALKVVG 215
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 250 PGGSYNIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
PG S + P + + R NH D RN E+ +R + RD + L +K + +
Sbjct: 1121 PGPSRSKPPMIGAVKNRPNHTEMLDKRNKESEEKRRKDRD--ELERLRNKKHTTEEEKIK 1178
Query: 430 IPNLTNSHKSYG 465
+ L N+ K G
Sbjct: 1179 MARLQNALKVVG 1190
>Z92831-6|CAB07365.2| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 289 IIERRNHKVPHDLRNVENPSQRPE-HRDP--QDY-SALNERKSQDKHTENLIPNLTNSHK 456
I E +N V ++VE +Q+ E HR Q++ S+L ERK+ ++ I L SHK
Sbjct: 28 INELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEELKRSHK 87
Query: 457 S 459
+
Sbjct: 88 N 88
>Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 289 IIERRNHKVPHDLRNVENPSQRPE-HRDP--QDY-SALNERKSQDKHTENLIPNLTNSHK 456
I E +N V ++VE +Q+ E HR Q++ S+L ERK+ ++ I L SHK
Sbjct: 28 INELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEELKRSHK 87
Query: 457 S 459
+
Sbjct: 88 N 88
>Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical
protein C06C3.8 protein.
Length = 513
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 105 PERELSFLSYQ*CSENPGNTIYKLGSSKLSSKTVI 209
PER++S Y SE+P + K+GS + K VI
Sbjct: 230 PERKMSHTEYLQLSESPKLGVQKIGSKDVLLKKVI 264
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = +1
Query: 295 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYG--- 465
E+R V + E+ ++PE R + A+ + S+D+ E + K
Sbjct: 274 EKRKRAVNDSSSDDEDEEEKPEKRSKKSKKAVIDSSSEDEEEEKSSKKRSKKSKKESDEE 333
Query: 466 YTGIDKDESIVSQDKVAFT-NDNGNLYQSKESHSENSGTSTQDTVPK 603
D +E +V K + + KE E+SG ++ V K
Sbjct: 334 QQASDSEEEVVEVKKNSKSPKKTPKKTAVKEESEESSGDEEEEVVKK 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,685,493
Number of Sequences: 27780
Number of extensions: 374477
Number of successful extensions: 1082
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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