Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_G02
(821 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr... 33 0.30
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 1.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 2.1
At4g15810.1 68417.m02406 chloroplast outer membrane protein, put... 29 3.7
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta... 29 4.9
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 28 6.5
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 28 6.5
At4g04030.1 68417.m00573 ovate family protein 65% similar to ova... 28 8.6
At3g54730.1 68416.m06055 hypothetical protein 28 8.6
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 28 8.6
At2g31740.1 68415.m03876 expressed protein 28 8.6
At2g19850.1 68415.m02321 hypothetical protein 28 8.6
>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
domain; similar to Protein E6 (Swiss-Prot:Q01197)
[Gossypium hirsutum]
Length = 267
Score = 32.7 bits (71), Expect = 0.30
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +1
Query: 355 PEHRDPQDYSAL--NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 528
P+ ++P + + NE+K D IP N + YG+ D + ++ +K D
Sbjct: 39 PKEQNPNNLVPIETNEKKEPDDQNPAFIPQSENGYGLYGHETTDNNNEELNNNKY---ED 95
Query: 529 NGNLYQSKESHSENSGTSTQDTVP--KIIYVQTDGLQDN 639
N N S + S + TQ++ K Y +T + DN
Sbjct: 96 NVNYDDSFSTPSLSETAQTQESYKNYKESYPKTTEIYDN 134
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/80 (21%), Positives = 38/80 (47%)
Frame = +1
Query: 295 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKSYGYTG 474
ER++ K DL++V+ ++ E + +D S + + + + + NLIP L +
Sbjct: 336 ERQDVKHREDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVL 395
Query: 475 IDKDESIVSQDKVAFTNDNG 534
+D+++ + +A G
Sbjct: 396 LDEEKKLEEIKAIAKVETEG 415
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 2.1
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Frame = +1
Query: 292 IERRNHKVPHDLRNVENPSQRPEHRDPQDYSALN---ERKSQDKHTENLIPNLTNSHKSY 462
+ER+ + P +L+ VE P +R + P + + ERK +K E P T H
Sbjct: 165 VERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIERKRP--TKLH--- 219
Query: 463 GYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIY-VQTDGLQDN 639
+ E+ + +VA T G L ++ + +S TV + Y + + LQ N
Sbjct: 220 --VDLPDKETCSDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQN 277
Query: 640 QLYQ 651
L Q
Sbjct: 278 GLTQ 281
>At4g15810.1 68417.m02406 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 898
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 475 IDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTDGLQDNQLYQV 654
I +DESI S+ + + D GN+ E H EN + + + + ++ +Q+
Sbjct: 326 IPRDESIGSESRDSGDKDAGNMIGKAEEHCENDRGAVSELEKLECADEPEIGMSSESFQL 385
Query: 655 AGSSGDSIIMS 687
+S +IM+
Sbjct: 386 TPTSDSEMIMN 396
>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 702
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 478 DKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQ 588
D+DE +K NG++ Q KES SE SG+ +
Sbjct: 666 DEDEKKDMDEKRGSKKANGSVKQKKESSSEESGSEEE 702
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 313 VPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
V D + V+ S PE RDP+ ++ L E +D EN+
Sbjct: 171 VSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 313 VPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENL 429
V D + V+ S PE RDP+ ++ L E +D EN+
Sbjct: 171 VSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209
>At4g04030.1 68417.m00573 ovate family protein 65% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 411
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 313 VPHDLRNVENPSQRPEHRDPQDY 381
+P DL ++ +PS+ P+ DP DY
Sbjct: 22 LPQDLTSLVSPSEPPDPPDPPDY 44
>At3g54730.1 68416.m06055 hypothetical protein
Length = 387
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 313 VPHDLRNVENPSQRPEHRDPQDY 381
+P DL ++ +PS+ P+ DP DY
Sbjct: 26 LPQDLTSLVSPSEPPDPPDPPDY 48
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 463 GYTGIDKDESIVSQDKVAFTNDNGNLY-QSKESHSENSGTSTQDTVPKIIYVQTDGLQD 636
G G E+I+ D T+ NGNLY Q KE ++++ + +V +D + D
Sbjct: 853 GSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSVTSENNYVLLKHVSSDDVMD 911
>At2g31740.1 68415.m03876 expressed protein
Length = 760
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 538 LYQSKESHSENSGTSTQDTVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMSRAQTNKGPLV 717
+Y+S S+ E+ TS+ ++++ +T+GL ++ V D I+ ++Q K V
Sbjct: 425 VYESAPSNLEDLSTSSDLAFRRLVFKRTEGLIQSEALLVE----DGEILEQSQKEKTKNV 480
Query: 718 LYSETK*FNAANNLEQSTILPQTS 789
S+ K N N E S L + S
Sbjct: 481 SQSKRK-GNKKQNQEPSRPLMRVS 503
>At2g19850.1 68415.m02321 hypothetical protein
Length = 296
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 313 VPHDLRNVENPSQRPEHRDPQDY 381
+P DL ++ +PS+ P+ DP DY
Sbjct: 26 LPQDLTSLVSPSEPPDPPDPPDY 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,010
Number of Sequences: 28952
Number of extensions: 343762
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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