Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_G01
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.18 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = +1

Query: 655 PPPXXXXPPPPPXXGXXPXXPXXPPP--PPXXPP 750
           P P     P  P  G  P     PPP  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 654 PPPPXGXXPPPPXXGXXPPXPXXXPP 731
           P  P    PP P  G  P  P   PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +2

Query: 656 PPPXGXXPPPPPXXGXXPXXPXXPPXPPXXPXXXXXP 766
           PP  G   PP P        P  P  P   P     P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 658 PPXXXXPPPPP 690
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 706 PXXPXXPPPPP 738
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,398
Number of Sequences: 438
Number of extensions: 13345
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)