Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F24
         (909 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2BBJ9 Cluster: Putative uncharacterized protein; n=1; ...    35   3.3  
UniRef50_A6EP00 Cluster: DNA topoisomerase IV subunit B; n=1; un...    34   5.8  

>UniRef50_Q2BBJ9 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
           protein - Bacillus sp. NRRL B-14911
          Length = 192

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 331 DPDNKTFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGD 495
           D   K  L  GS+ I + YP   F KV  I +  +  + L+ F++DH+ DR+ G+
Sbjct: 17  DSIEKGHLNSGSELIKSYYP---FQKVEYIKRTYTKADMLSIFQRDHFIDRYSGE 68


>UniRef50_A6EP00 Cluster: DNA topoisomerase IV subunit B; n=1;
           unidentified eubacterium SCB49|Rep: DNA topoisomerase IV
           subunit B - unidentified eubacterium SCB49
          Length = 47

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +2

Query: 206 LXVFQDV*DHTVTNGLVTCPKVLLINCVKGRSTSIQILNFIGTLIIK 346
           + VF D    ++T   V C  V +++ VK  S+S+++LN IG  IIK
Sbjct: 1   MNVFIDTLQFSITTKEVACFNVKILSEVKHNSSSVEVLNNIGYNIIK 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,212,729
Number of Sequences: 1657284
Number of extensions: 11704377
Number of successful extensions: 27764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27762
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)