Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F24
         (909 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05100.1 68418.m00541 expressed protein                             29   5.6  
At2g04270.4 68415.m00419 glycoside hydrolase starch-binding doma...    28   7.4  
At2g04270.2 68415.m00417 glycoside hydrolase starch-binding doma...    28   7.4  
At2g04270.1 68415.m00416 glycoside hydrolase starch-binding doma...    28   7.4  

>At5g05100.1 68418.m00541 expressed protein
          Length = 324

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 339 IRVPIKFKIWILVERPLTQFINNTFGHVTKPFVTVWSHTSW 217
           I +P+ F   I  + P TQ   N +GH   P +T  S+T W
Sbjct: 261 IPIPLPFHDAIFPQMPRTQASLN-YGHPLNPAMTAPSYTEW 300


>At2g04270.4 68415.m00419 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 713

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 402 KYIFRINSS-NFFRTNGKKSFIIRVPIKFKIWILVERPLTQFINNTFGHVTKPFV 241
           ++I R++S  + F T GK++ +  +    K+WIL+ +    F   TF    KPF+
Sbjct: 614 RFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILL-KVARHFTRGTF--EVKPFM 665


>At2g04270.2 68415.m00417 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 871

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 402 KYIFRINSS-NFFRTNGKKSFIIRVPIKFKIWILVERPLTQFINNTFGHVTKPFV 241
           ++I R++S  + F T GK++ +  +    K+WIL+ +    F   TF    KPF+
Sbjct: 772 RFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILL-KVARHFTRGTF--EVKPFM 823


>At2g04270.1 68415.m00416 glycoside hydrolase starch-binding
            domain-containing protein contains Pfam profile: PF00686
            starch binding domain
          Length = 996

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 402  KYIFRINSS-NFFRTNGKKSFIIRVPIKFKIWILVERPLTQFINNTFGHVTKPFV 241
            ++I R++S  + F T GK++ +  +    K+WIL+ +    F   TF    KPF+
Sbjct: 897  RFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILL-KVARHFTRGTF--EVKPFM 948


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,361
Number of Sequences: 28952
Number of extensions: 257958
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)