Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F23
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   5.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   5.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12  LXTHYREFLKIFGNNSCTRS--TDVTPSCYTKVNLTTLYYSICLI*AEYLYYS 164
           + T   EF++I  + S TRS    +T SC   +    +   +C I  E   Y+
Sbjct: 110 IATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT 162


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12  LXTHYREFLKIFGNNSCTRS--TDVTPSCYTKVNLTTLYYSICLI*AEYLYYS 164
           + T   EF++I  + S TRS    +T SC   +    +   +C I  E   Y+
Sbjct: 110 IATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT 162


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 228 DYLLLNETMPSIRG 187
           D+L+ N  MPSIRG
Sbjct: 469 DHLVWNSWMPSIRG 482


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12  LXTHYREFLKIFGNNSCTRS--TDVTPSCYTKVNLTTLYYSICLI*AEYLYYS 164
           + T   EF++I  + S TRS    +T SC   +    +   +C I  E   Y+
Sbjct: 49  IATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT 101


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 361 VVTLKKPWTRWTDECWTAGNF 423
           +V++ K W +W D   T  N+
Sbjct: 689 LVSVNKSWNKWNDWQETQNNY 709


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 361 VVTLKKPWTRWTDECWTAGNF 423
           +V++ K W +W D   T  N+
Sbjct: 689 LVSVNKSWNKWNDWQETQNNY 709


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 361 VVTLKKPWTRWTDECWTAGNF 423
           +V++ K W +W D   T  N+
Sbjct: 689 LVSVNKSWNKWNDWQETQNNY 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,132
Number of Sequences: 438
Number of extensions: 3703
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)