Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F23
(908 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 92 4e-19
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 92 4e-19
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 79 3e-15
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 77 2e-14
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 76 3e-14
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 73 2e-13
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 68 1e-11
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 67 2e-11
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 65 7e-11
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 61 1e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 60 2e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 60 2e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 60 2e-09
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 60 2e-09
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 60 3e-09
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 60 3e-09
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 60 3e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 60 3e-09
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 59 3e-09
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 59 3e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 59 5e-09
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 58 6e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 58 6e-09
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 56 2e-08
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 56 2e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 56 3e-08
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 56 3e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 56 4e-08
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 55 7e-08
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 55 7e-08
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 55 7e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 55 7e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 1e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 54 1e-07
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 1e-07
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 54 1e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 54 1e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 54 2e-07
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 53 2e-07
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 53 2e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 53 3e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 53 3e-07
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 52 4e-07
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 52 5e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 52 5e-07
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 51 9e-07
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 51 9e-07
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 51 1e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 51 1e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 51 1e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 51 1e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 51 1e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 51 1e-06
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 51 1e-06
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 50 2e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 50 2e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 50 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 50 3e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 49 4e-06
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 49 5e-06
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 49 5e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 48 7e-06
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 48 7e-06
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 48 7e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 48 9e-06
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 48 9e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 48 9e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 48 1e-05
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 48 1e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 48 1e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 48 1e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 48 1e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 47 2e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 47 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 47 2e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 47 2e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 47 2e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 47 2e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 46 3e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 46 3e-05
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 46 3e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 5e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 46 5e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 46 5e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 46 5e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 45 6e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 45 6e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 45 6e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 45 8e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 45 8e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 45 8e-05
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 45 8e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 45 8e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 1e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 44 1e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 1e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 44 1e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 44 1e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 44 1e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 44 1e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 43 2e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 43 2e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 2e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 43 2e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 43 3e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 43 3e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 43 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 43 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 43 3e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 42 4e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 42 4e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 42 4e-04
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 42 4e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 42 6e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 42 6e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 6e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 42 7e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 42 7e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 41 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 41 0.001
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 41 0.001
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 41 0.001
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 41 0.001
At2g47310.1 68415.m05906 flowering time control protein-related ... 41 0.001
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 0.001
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 41 0.001
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 41 0.001
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 41 0.001
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 41 0.001
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 41 0.001
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 41 0.001
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 40 0.002
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.002
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 40 0.002
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 40 0.002
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 40 0.002
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 40 0.003
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 39 0.004
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 39 0.004
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 39 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 0.005
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 39 0.005
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.009
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.012
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 38 0.012
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 38 0.012
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 38 0.012
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 38 0.012
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.012
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.016
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 37 0.016
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 37 0.021
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 37 0.021
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 37 0.021
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 36 0.037
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 36 0.037
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.037
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.037
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.037
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 36 0.037
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 36 0.049
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.065
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 35 0.065
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 35 0.065
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 35 0.065
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 35 0.065
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 35 0.065
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.086
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.086
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 34 0.11
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 34 0.11
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 34 0.11
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.11
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 34 0.15
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 34 0.15
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 33 0.35
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 32 0.46
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.60
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.80
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.80
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.80
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 1.1
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 1.1
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 31 1.1
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 31 1.4
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.8
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 30 1.8
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 30 1.8
At1g63610.2 68414.m07192 expressed protein 30 1.8
At1g63610.1 68414.m07191 expressed protein 30 1.8
At5g03480.1 68418.m00304 expressed protein ; expression support... 30 2.4
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 30 2.4
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 3.2
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 29 4.3
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 5.6
At5g53700.1 68418.m06672 hypothetical protein 28 9.8
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 9.8
At3g04260.1 68416.m00450 SAP domain-containing protein contains ... 28 9.8
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 28 9.8
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/78 (52%), Positives = 61/78 (78%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFAFVR+ + +A +A++ +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 393 DGRMLDGRELRVQMARYG 446
DGR++DGRE+ VQ A+YG
Sbjct: 78 DGRVVDGREITVQFAKYG 95
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/78 (52%), Positives = 61/78 (78%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFAFVR+ + +A +A++ +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 393 DGRMLDGRELRVQMARYG 446
DGR++DGRE+ VQ A+YG
Sbjct: 78 DGRVVDGREITVQFAKYG 95
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 79.4 bits (187), Expect = 3e-15
Identities = 41/79 (51%), Positives = 49/79 (62%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V NL + EDLRR FE+ G V DIY+PRD YT + RGF F++F + DA EA M
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 393 DGRMLDGRELRVQMARYGR 449
DG +L GREL V A R
Sbjct: 99 DGYLLLGRELTVVFAEENR 117
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/79 (50%), Positives = 49/79 (62%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V NL + EDLR+ FE+ G V DIY+PRD YT + RGF FV+F + DA +A M
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 393 DGRMLDGRELRVQMARYGR 449
DG +L GREL V A R
Sbjct: 98 DGYLLLGRELTVVFAEENR 116
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 76.2 bits (179), Expect = 3e-14
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +3
Query: 189 HESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 368
HES S L + NL P DLR FER G + DIY+PR+ YT E RGF FV++ D
Sbjct: 41 HESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAED 100
Query: 369 AEEALDTMDGRMLDGRELRVQMARYGR 449
A EA+ M+ +++ GRE+ + A R
Sbjct: 101 AAEAMKRMNHKVIGGREIAIVFAEENR 127
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/79 (48%), Positives = 48/79 (60%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V N+ PE+LR FER G V D+YIPRD Y+ + RGFAFV F + DA EA +M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 393 DGRMLDGRELRVQMARYGR 449
+ R GRE+ V +A R
Sbjct: 109 NRRSFAGREITVVVASESR 127
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 67.7 bits (158), Expect = 1e-11
Identities = 32/77 (41%), Positives = 49/77 (63%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S L V NL + T D+ +F G+V + + +DR+TR+SRG AFV + R DA +A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 387 TMDGRMLDGRELRVQMA 437
+MD ++L+GR+L V +A
Sbjct: 117 SMDAKILNGRKLTVSIA 133
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 66.9 bits (156), Expect = 2e-11
Identities = 34/80 (42%), Positives = 47/80 (58%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+R+ V NL+ TT + LR F G V D + RDRYT SRGF FV + +AE A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 387 TMDGRMLDGRELRVQMARYG 446
MDG+ L+GR + V++ G
Sbjct: 63 GMDGKELNGRRVSVKLFGIG 82
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 64.9 bits (151), Expect = 7e-11
Identities = 28/81 (34%), Positives = 53/81 (65%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S++ V NL + T+ + L+R F GE+ ++ + +D + S+G+AF++F + DA A++
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 387 TMDGRMLDGRELRVQMARYGR 449
TMD RM +GR + + +A+ G+
Sbjct: 100 TMDRRMYNGRMIYIDIAKPGK 120
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/82 (41%), Positives = 45/82 (54%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+ L V L+ RTT E LR F + GEV D + DR + S+GF FVR+ D+ + +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
MDG+ LDG V A Y RP
Sbjct: 116 GMDGKFLDG---WVIFAEYARP 134
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 390 MDGRMLDGRELRVQMAR 440
M+G+ LDGR + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 390 MDGRMLDGRELRVQMAR 440
M+G+ LDGR + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 390 MDGRMLDGRELRVQMAR 440
M+G+ LDGR + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +3
Query: 177 EDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 356
E+ A + + + N+++ TT E L +F R GE+ I + D+ T+ GF FV F+
Sbjct: 24 EEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFY 83
Query: 357 ERRDAEEALDTMDGRMLDGRELRV 428
R D E+A+ + G +LD R +RV
Sbjct: 84 SREDTEDAVKYISGTILDDRPIRV 107
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 59.7 bits (138), Expect = 3e-09
Identities = 27/78 (34%), Positives = 50/78 (64%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L V L+ TT + LR++F G++ + + RD T+ +GF F+ F DA +AL
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 387 TMDGRMLDGRELRVQMAR 440
++DG+++DGR + V++A+
Sbjct: 67 SLDGKIVDGRLIFVEVAK 84
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 59.7 bits (138), Expect = 3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S+L V L++ T L++ F GEV + + DR T SRGF FV F A A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 387 TMDGRMLDGRELRVQMA 437
MDG+ L+GR++RV +A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 59.7 bits (138), Expect = 3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S+L V L++ T L++ F GEV + + DR T SRGF FV F A A+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 387 TMDGRMLDGRELRVQMA 437
MDG+ L+GR++RV +A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.7 bits (138), Expect = 3e-09
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S+L + L++ + L+ F GEV ++ I D+ + SRGF FV F E DA A D
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 387 TMDGRMLDGRELRVQMA 437
MDG+ L GR LR+ A
Sbjct: 101 AMDGKGLLGRPLRISFA 117
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/80 (38%), Positives = 42/80 (52%)
Frame = +3
Query: 198 MAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 377
M+ S+L + + Y + LR F + GEV D + DR T SRGF FV F A
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 378 ALDTMDGRMLDGRELRVQMA 437
A+ +DGR L GR ++V A
Sbjct: 97 AIQALDGRDLHGRVVKVNYA 116
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/80 (42%), Positives = 45/80 (56%)
Frame = +3
Query: 198 MAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 377
M+ S++ V ++Y T LR F + GEV D I DR T SRGFAFV F +A
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 378 ALDTMDGRMLDGRELRVQMA 437
A+ +DG+ L GR +RV A
Sbjct: 91 AMQ-LDGQDLHGRRIRVNYA 109
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V NL++ T E L F CG+V + D T SRG+ FV + + + E AL++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 390 MDGRMLDGRELRVQMAR 440
+DG L+GR +RV +A+
Sbjct: 238 LDGFELEGRAIRVNLAQ 254
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L NL Y L ++ + + + +R T +SRGFAFV D +D
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
+DG GR L+V A +P
Sbjct: 145 NLDGTEYLGRALKVNFADKPKP 166
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/78 (35%), Positives = 46/78 (58%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S+L + L++ TT + L F +CG+V + I DR + S+GF FV F +A++AL
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 387 TMDGRMLDGRELRVQMAR 440
+G+ L+GR + V A+
Sbjct: 94 EFNGQQLNGRTIFVDYAK 111
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.4 bits (135), Expect = 6e-09
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L++R T DL F + G+V D+++ D +TRESRGF F+ DA + ++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 393 DGRMLDGRELRVQMARYGR 449
D +L GR + V+ AR R
Sbjct: 137 DHSVLQGRVITVEKARRRR 155
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
++ W +L + NL ++ P D++ VF G V D++IP++ T +GFAFV+F ++DA
Sbjct: 327 KAQKW-KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 372 EEALDTMDGRMLDGRELRVQMA 437
A+ +G M R + V A
Sbjct: 386 ANAIKKFNGHMFGKRPIAVDWA 407
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V L Y T L F G V ++ ++ + E RGFAFV+F + D A++ +G
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 399 RMLDGRELRVQMARYGRP 452
+ GR + V+ A + RP
Sbjct: 84 STVGGRRITVKQAAH-RP 100
Score = 36.3 bits (80), Expect = 0.028
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L + NL + T E++++ F GEV + + + T+ G AFV+F + A+
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 393 D-----GRMLDGRELRVQMA 437
D G +L GR+L V A
Sbjct: 623 DTASGVGVLLKGRQLNVMRA 642
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L V L++RTT + LR FE+ G + + + D+ +GFAF+R+ +A +A+
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 387 TMDGRMLDGRELRVQMAR 440
M G+ LDGR + V+ A+
Sbjct: 137 GMHGKFLDGRVIFVEEAK 154
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/89 (37%), Positives = 46/89 (51%)
Frame = +3
Query: 171 VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 350
VT L + ++L + L++ T LR F G+V D + DR T SRGF FV
Sbjct: 23 VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
Query: 351 FFERRDAEEALDTMDGRMLDGRELRVQMA 437
F + A A+ MDG+ L+GR +RV A
Sbjct: 83 FNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/89 (37%), Positives = 46/89 (51%)
Frame = +3
Query: 171 VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 350
VT L + ++L + L++ T LR F G+V D + DR T SRGF FV
Sbjct: 23 VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
Query: 351 FFERRDAEEALDTMDGRMLDGRELRVQMA 437
F + A A+ MDG+ L+GR +RV A
Sbjct: 83 FNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/77 (38%), Positives = 41/77 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
SR+ V L+ T DL R F R G++ D I +R T SRGF F+ F +RR +E++
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 387 TMDGRMLDGRELRVQMA 437
M GR R + V A
Sbjct: 67 EMHGRDFGDRVISVNRA 83
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/89 (37%), Positives = 48/89 (53%)
Frame = +3
Query: 171 VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 350
V D+R + S ++V NL+ T DL +F G V +Y+ D+ T SRGF FV
Sbjct: 202 VGSDMRRRNDENS-VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVN 260
Query: 351 FFERRDAEEALDTMDGRMLDGRELRVQMA 437
F R DA+ A++ ++G D LRV+ A
Sbjct: 261 FVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R + L + T+ LR FE+ G + + + D+++ SRGF F+ F E++ +EA+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 390 MDGRMLDGRELRVQMAR 440
M+G LDGR + V A+
Sbjct: 68 MNGMDLDGRTITVDKAQ 84
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
+ L V L Y ++ ++R FE G + +++ D+ T + +G+AF+ + RD + A
Sbjct: 137 YKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAY 196
Query: 384 DTMDGRMLDGRELRVQMAR 440
DG+ +DGR + V + R
Sbjct: 197 KQADGQKIDGRRVLVDVER 215
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 54.8 bits (126), Expect = 7e-08
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+RL V L+ RT DL R+F R G V D+ + RD +AFV F + RDA++A
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDADDARH 62
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
+DGR DG + V+ +R G P
Sbjct: 63 YLDGRDFDGSRITVEFSR-GAP 83
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 54.8 bits (126), Expect = 7e-08
Identities = 30/84 (35%), Positives = 41/84 (48%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
+ ++M + L V L L F G++ D+ P D+ ++ R F FV F ER
Sbjct: 6 QQQAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLERE 65
Query: 366 DAEEALDTMDGRMLDGRELRVQMA 437
DA A+D MDG L GR L V A
Sbjct: 66 DASAAMDNMDGAELYGRVLTVNYA 89
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/73 (36%), Positives = 42/73 (57%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L++R T DL F + G+V D+++ D +TRESRGF F+ DA + ++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 393 DGRMLDGRELRVQ 431
D +L GR + V+
Sbjct: 107 DHSVLQGRVITVE 119
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.4 bits (125), Expect = 1e-07
Identities = 28/80 (35%), Positives = 40/80 (50%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
RL V NL Y T +L ++F G V D+ I D+ T SRGF FV +A+EA+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 390 MDGRMLDGRELRVQMARYGR 449
+ + GR ++V R
Sbjct: 177 FNSSQIGGRTVKVNFPEVPR 196
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR 401
NL + T + L+ F ++ G +G I +R T SRGF F+ F + + AL TM+G
Sbjct: 225 NLGWNLTSQGLKDAFGDQPGVLGAKVI-YERNTGRSRGFGFISFESAENVQSALATMNGV 283
Query: 402 MLDGRELRVQMA 437
++GR LR+ +A
Sbjct: 284 EVEGRALRLNLA 295
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+RL V L+ RT DL R+F R G V D+ + RD +AFV F + RDA++A
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDADDARY 62
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
+DGR DG + V+ +R G P
Sbjct: 63 YLDGRDFDGSRITVEASR-GAP 83
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+++ V NLT+RTT +DLRR FE+ G+V D + + Y S+G+ F+ F + AL
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQ 71
Query: 387 TMDGRMLDGRELRVQMARYG 446
++DGR +A G
Sbjct: 72 N-SKPIIDGRTTNCNLASAG 90
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T + + R F GEV D I DR T S+GF FV F + A+D
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 390 MDGRMLDGRELRVQ 431
M+G+ LDGR + Q
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/83 (32%), Positives = 48/83 (57%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++++ V L + T +++RR FE+ GE+ + I D+ T +S+G+ FV F E A A+
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 384 DTMDGRMLDGRELRVQMARYGRP 452
++DGR+ +A +GRP
Sbjct: 76 -ADPNPVIDGRKANCNIASFGRP 97
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/83 (32%), Positives = 48/83 (57%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++++ V L + T +++RR FE+ GE+ + I D+ T +S+G+ FV F E A A+
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 384 DTMDGRMLDGRELRVQMARYGRP 452
++DGR+ +A +GRP
Sbjct: 76 -ADPNPVIDGRKANCNIASFGRP 97
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R+ V NL + L R+F G+V D + DR T SRGF FV+ + A+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 390 MDGRMLDGRELRVQMA 437
+DG+ L+GR ++V +A
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L V NL Y + L +FE+ G V + +R T +SRGF FV +AE+A++
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 387 TMDGRMLDGRELRVQMA--RYGRP 452
+ ++GR L V A R RP
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRP 196
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T L F + G+V D I DR T SRGF FV F + + ++A++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 390 MDGRMLDGRELRVQMAR 440
M+G+ LDGR + V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T L F + G+V D I DR T SRGF FV F + + ++A++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 390 MDGRMLDGRELRVQMAR 440
M+G+ LDGR + V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/87 (32%), Positives = 45/87 (51%)
Frame = +3
Query: 177 EDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 356
+D ++ SR+ V L++ T L F+R G++ + I R T RGF F+ F
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 357 ERRDAEEALDTMDGRMLDGRELRVQMA 437
+RR A++A+ M GR L + + V A
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/87 (32%), Positives = 45/87 (51%)
Frame = +3
Query: 177 EDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 356
+D ++ SR+ V L++ T L F+R G++ + I R T RGF F+ F
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 357 ERRDAEEALDTMDGRMLDGRELRVQMA 437
+RR A++A+ M GR L + + V A
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKA 88
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/83 (32%), Positives = 47/83 (56%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
E ++ +RL N+ + +TPED+R +FE+ G V DI + + R +RG F+ +A
Sbjct: 89 EEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRGLVFIEMASPEEA 147
Query: 372 EEALDTMDGRMLDGRELRVQMAR 440
AL +++ +GR L+V A+
Sbjct: 148 ATALKSLESCEYEGRRLKVDYAK 170
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R+ V NL + L ++F G+V + + DR T SRGF FV + + EA+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 390 MDGRMLDGRELRVQMARYGRP 452
+DG+ L+GR +RV +A P
Sbjct: 305 LDGQNLEGRAIRVNVAEERPP 325
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L V NL Y + L +FE+ G V + +R T +SRGF FV +AE A++
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 387 TMDGRMLDGRELRVQMA--RYGRP 452
+ L+GR L V A R RP
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRP 233
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V + + T DL VF + GE+ D+ + RD+ T +S+GFAF+ + ++R A+D ++G
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
Query: 399 RMLDGRELRV 428
++ GR ++V
Sbjct: 100 ALVLGRTIKV 109
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 51.2 bits (117), Expect = 9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N+ Y TPE++++ F+ CG V + I D++ + +GFA+V F E +EAL +
Sbjct: 96 VGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLNES 154
Query: 399 RMLDGRELRVQMARYGRP 452
L GR+L+V R P
Sbjct: 155 E-LHGRQLKVLQKRTNVP 171
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 51.2 bits (117), Expect = 9e-07
Identities = 32/95 (33%), Positives = 48/95 (50%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R ++ RL V L+ TT E L+ F G++ D + DR + S+GF FV +
Sbjct: 27 RCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIE 86
Query: 366 DAEEALDTMDGRMLDGRELRVQMARYGRPLIAIQE 470
DAE+A M+ + LDG + V AR P +Q+
Sbjct: 87 DAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQ 121
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N+ Y TPE+++ F+ CG V + I D++ + +GFA+V F E +EAL +
Sbjct: 93 VGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNES 151
Query: 399 RMLDGRELRVQMARYGRP 452
L GR+L+V R P
Sbjct: 152 E-LHGRQLKVSPKRTNVP 168
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N+ Y TPE+++ F+ CG V + I D++ + +GFA+V F E +EAL +
Sbjct: 93 VGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNES 151
Query: 399 RMLDGRELRVQMARYGRP 452
L GR+L+V R P
Sbjct: 152 E-LHGRQLKVSPKRTNVP 168
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+RL V NL++ L +F G+V + + DR + S+GF FV ++ ++A++
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
+++G LDGR++RV A RP
Sbjct: 309 SLNGADLDGRQIRVSEAE-ARP 329
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V NL++ L ++FE G V + + D+ T SRGF FV + E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 390 MDGRMLDGRELRV 428
+G +GR LRV
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+RL V NL++ L +F G+V + + DR + S+GF FV ++ ++A++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
+++G LDGR++RV A RP
Sbjct: 317 SLNGADLDGRQIRVSEAE-ARP 337
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V NL++ L ++FE G V + + D+ T SRGF FV + E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 390 MDGRMLDGRELRV 428
+G +GR LRV
Sbjct: 160 FNGYEFEGRPLRV 172
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+R+ V NL++ L +F G+V + + DR + S+GF FV + ++ + A+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
++DG LDGR++RV A RP
Sbjct: 264 SLDGADLDGRQIRVSEAE-ARP 284
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/73 (36%), Positives = 36/73 (49%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V NL + L ++FE G V + + D+ T SRGF FV + E A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 390 MDGRMLDGRELRV 428
+G LDGR LRV
Sbjct: 152 FNGYELDGRPLRV 164
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
RL V NL + +DLR+VFE G V + +PRD T +GF FV+F DA AL+
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNL 344
Query: 390 MDGRMLDGRELRV 428
+ GR ++V
Sbjct: 345 NGQLEIAGRAIKV 357
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/82 (30%), Positives = 47/82 (57%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+++ V L + T +++RR F++ GE+ + I D+ T +S+G+ FV F + A A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV- 75
Query: 387 TMDGRMLDGRELRVQMARYGRP 452
++DGR+ +A +GRP
Sbjct: 76 ADPNPVIDGRKANCNIASFGRP 97
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/64 (34%), Positives = 40/64 (62%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 434
L++VF G+V ++ I + TR+S G+ +V F + DA+ A++ M+G+ DGR + V+
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKF 152
Query: 435 ARYG 446
+ G
Sbjct: 153 GQPG 156
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
++V NL+ T DL +F G V ++ D+ T SRGF FV F R DA+ A++ +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 393 DGRMLDGRELRVQ 431
+G D LRV+
Sbjct: 236 NGYGYDNLILRVE 248
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/88 (27%), Positives = 50/88 (56%)
Frame = +3
Query: 177 EDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 356
+D + +L + L++ T+ + LR FE GE+ ++ I D+ ++ S+G+AF+ +
Sbjct: 272 DDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT 331
Query: 357 ERRDAEEALDTMDGRMLDGRELRVQMAR 440
A AL M+G++++G + V +A+
Sbjct: 332 TEEAAGTALKEMNGKIINGWMIVVDVAK 359
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/63 (39%), Positives = 36/63 (57%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 390 MDG 398
M+G
Sbjct: 67 MNG 69
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/89 (31%), Positives = 49/89 (55%)
Frame = +3
Query: 174 TEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 353
TE+ ++ ++ +L V NL + + D+ +F +CG V ++ I R + ++RGFAFV
Sbjct: 85 TEETQNSNLK-RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTM 142
Query: 354 FERRDAEEALDTMDGRMLDGRELRVQMAR 440
+A+ A+D D + GR + V AR
Sbjct: 143 ASGEEAQAAIDKFDTFQVSGRIISVSFAR 171
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L VD+L+ L+ +F GEV + I DR RG +V F R DAE+A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 393 DGRMLDGRELR 425
DG +DG+ ++
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L VD+L+ L+ +F GEV + I DR RG +V F R DAE+A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 393 DGRMLDGRELR 425
DG +DG+ ++
Sbjct: 160 DGAQIDGKVVK 170
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 177 EDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 356
E++R + +R+ V + + D R FER GE+ D+Y+P+D +++ RG F+ F
Sbjct: 81 EEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFS 140
Query: 357 ERRDAEEAL-DTMD 395
E+ + DT D
Sbjct: 141 SADSVEDLMEDTHD 154
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 374
+++ V L + +DLR F R G + D YIP+D RGF FV F E A+
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVAD 295
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V + + + L+ + G++ D + +DR T SRGF +V F DA+ AL
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-- 61
Query: 390 MDGRMLDGRELRVQMA 437
L R L V++A
Sbjct: 62 KGEHFLGNRILEVKVA 77
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 48.4 bits (110), Expect = 7e-06
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L E LR F + + D+ + RD++T SRGFAFV F+ DA +AL+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 393 DGRMLD--GRELRVQMAR 440
+ L+ G+ LRV A+
Sbjct: 520 NRTALERNGKILRVAYAK 537
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-- 392
V L+ ++T EDL ++ G + + + R++ + SRGFAF+ F A +D +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 393 DGRMLDGRELRVQMARYGRP 452
DG +LDGR+L M Y +P
Sbjct: 362 DGIVLDGRKL---MFHYSQP 378
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 48.4 bits (110), Expect = 7e-06
Identities = 34/118 (28%), Positives = 60/118 (50%)
Frame = +3
Query: 87 SCYTKVNLTTLYYSICLI*AEYLYYSK*VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRV 266
S YT N +++ LI ++++ V+ +S ++ + V NL T DL+R+
Sbjct: 83 SVYTACN----FHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 267 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 440
F GE+ + +D + SR F FV F + A A++ M+G ++D +EL V A+
Sbjct: 139 FGEFGEITSAVVMKDGEGK-SRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 327 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 440
S+G FV F +A +A+ M+G+M+ + + V +A+
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L+ R T +DL F + G+V ++ + TR SRGFAFV +DAE + +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 393 DGRMLDGR 416
+ +L+GR
Sbjct: 134 NQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L+ R T +DL F + G+V ++ + TR SRGFAFV +DAE + +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 393 DGRMLDGR 416
+ +L+GR
Sbjct: 133 NQSVLEGR 140
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 48.0 bits (109), Expect = 9e-06
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R ++ + + V +L+ T L + F D + D+ T SRGF FV F ++
Sbjct: 137 REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 366 DAEEALDTMDGRMLDGRELRVQMARYG 446
DA+ A++ M+G+ L R++R A G
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKG 223
Score = 35.5 bits (78), Expect = 0.049
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N+ + T L+ +F G V + R ++ + FV +F+RR A A+ +++G
Sbjct: 63 VGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRRSAALAILSLNG 118
Query: 399 RMLDGRELRVQMA 437
R L G+ ++V A
Sbjct: 119 RHLFGQPIKVNWA 131
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N+ Y TPE++++ F+ CG V + I D++ + +GFA+V F E + +L ++
Sbjct: 107 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSL-ILNE 164
Query: 399 RMLDGRELRVQMARYGRP 452
L GR+++V R P
Sbjct: 165 SELHGRQIKVSAKRTNVP 182
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+RL V NL T ED+R +F GEV I D+ R S G A V + R DA +AL
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPS-GTAEVVYPRRSDAFQALK 151
Query: 387 TMDGRMLDGRELRVQM 434
+ +LDGR +R+++
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V +L + T +++ +F + G V D+Y+ RD Y R+SRG FV++ + A A+D
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDG 270
Query: 390 MDG 398
++G
Sbjct: 271 LNG 273
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V ++ T E++R FE+ G V ++ + +D+ T + +G FV++ +DA+ A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 390 MDGRM 404
+ ++
Sbjct: 181 LHNQI 185
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V +L + T +++ +F + G V D+Y+ RD Y R+SRG FV++ + A A+D
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDG 270
Query: 390 MDG 398
++G
Sbjct: 271 LNG 273
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V ++ T E++R FE+ G V ++ + +D+ T + +G FV++ +DA+ A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 390 MDGRM 404
+ ++
Sbjct: 181 LHNQI 185
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S + V N+ T E+LR+ F +CG + + D + S+GF FV F +A +A+
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVK 362
Query: 387 TMDGRMLDGRELRVQMAR 440
T G+M G+ L V +A+
Sbjct: 363 TFHGQMFHGKPLYVAIAQ 380
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++ L + NL + + LR F G++ + I +D R RG+AFV F DA A
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAA 258
Query: 384 DTMDGRMLDGRELRVQMAR 440
+T++G + L V A+
Sbjct: 259 ETVNGTKFGSKCLYVGRAQ 277
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +3
Query: 195 SMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 374
S A R+ + N+ T E L ++ E G V + + D+Y+ SR F F DA
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 375 EALDTMDGRMLDGRELRVQM 434
++ ++G ++GRE++V +
Sbjct: 132 AVVEKLNGNTVEGREIKVNI 151
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V NL T E L +F G+V + R T +S GF FV F D E A+
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 390 MDGRMLDGRELRVQMA 437
++ +L+G+++RV A
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+++ V L + T + +RR FE+ GE+ + + D+ T S+G+ FV F E A A
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 387 TMDGRMLDGRELRVQMARYG 446
M+ ++DGR +A G
Sbjct: 82 NMN-PVIDGRRANCNLACLG 100
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S L V +++ +T E L + F + G+V + + D+ +GFA+V F + +AE+AL
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 387 TMDGRMLDGR 416
++ +++DGR
Sbjct: 81 ELNAQLVDGR 90
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 47.2 bits (107), Expect = 2e-05
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V L + TT E L VFE GE+ + + D+ T +++GF FV F R+ A+EAL
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 390 MDGRMLDGRELRVQMARYG 446
R+L+ R Q+A G
Sbjct: 165 PKKRILN-RTATCQLASMG 182
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 47.2 bits (107), Expect = 2e-05
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V L + TT E L VFE GE+ + + D+ T +++GF FV F R+ A+EAL
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 390 MDGRMLDGRELRVQMARYG 446
R+L+ R Q+A G
Sbjct: 165 PKKRILN-RTATCQLASMG 182
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +3
Query: 180 DLRHESMAWS---RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 350
D RH S + S +L V +++ TT E F + GEV D I DR T RGF FV
Sbjct: 54 DHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVT 113
Query: 351 FFERRDAEEALDTMDGRMLDGREL 422
F + AE+ L+ + ++D R++
Sbjct: 114 FADSAVAEKVLE--EDHVIDDRKV 135
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/64 (29%), Positives = 37/64 (57%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
++L+ F G++ + I D +T SRGF FV F+ D+ + L + DG++ + + +V
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVT-FQTEDSVDRLFS-DGKVHELGDKQV 228
Query: 429 QMAR 440
++ R
Sbjct: 229 EIKR 232
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++++ V L + T E LR+ FE+ GE+ + + D+ T S+G+ FV F + A A
Sbjct: 23 FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 384 DTMDGRMLDGRELRVQMARYGRP 452
++DGR +A GRP
Sbjct: 83 -ADPTPIIDGRRANCNLASLGRP 104
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 404
NL++ D+ F+ GEV D+ +R RGF V F +A++AL+ GR
Sbjct: 303 NLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE-FHGRP 361
Query: 405 LDGRELRVQMAR 440
L GRE+R+ +A+
Sbjct: 362 LLGREIRLDIAQ 373
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 434
LR F CGE+ ++ +P DR T S+G A++ F E + E+AL+ M G L V
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGK--EKALELNGSDMGGGFYLVVDE 478
Query: 435 AR 440
R
Sbjct: 479 PR 480
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/70 (32%), Positives = 42/70 (60%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V +L + EDL++VF GEV ++ I ++ T++S+G AF+RF A+ A+ +
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKS 277
Query: 399 RMLDGRELRV 428
M++G++ V
Sbjct: 278 PMINGKKCGV 287
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCG--EVGDIYIPRD-RYTRESRGFAFVRFFERRDAEEA 380
L V N+ TPE LR + G + DI + D +RG+AF+ F R DA +A
Sbjct: 296 LFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDA 354
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Frame = +3
Query: 171 VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 350
+ L+ E A + L + N+ ++L F+ G+V + D+ T S+ F F+
Sbjct: 327 IPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFIS 386
Query: 351 FFERRDAEEALDTMDGRMLDGRELRVQMAR 440
+ + A+ A++TM+G L G++L+VQ+ R
Sbjct: 387 YDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V L + +++ +F G + D+ I R + S+G F+++ + A A++
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEA 168
Query: 390 MDGR 401
++GR
Sbjct: 169 LNGR 172
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Frame = +3
Query: 171 VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 350
+ L+ E A + L + N+ ++L F+ G+V + D+ T S+ F F+
Sbjct: 318 IPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFIS 377
Query: 351 FFERRDAEEALDTMDGRMLDGRELRVQMAR 440
+ + A+ A++TM+G L G++L+VQ+ R
Sbjct: 378 YDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V L + +++ +F G + D+ I R + S+G F+++ + A A++
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEA 159
Query: 390 MDGR 401
++GR
Sbjct: 160 LNGR 163
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
E + ++ + V NL+ + E+L +VF G I RD + S+GF FV F DA
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDA 277
Query: 372 EEALDTMDGRMLDGRELRVQMAR 440
A+D ++G+ D +E V A+
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQ 300
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S L V NL T + LR F G + + RD + SRG FV F +A A+
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT 385
Query: 387 TMDGRMLDGRELRVQMAR 440
M+G+M+ + L V +A+
Sbjct: 386 EMNGKMIVTKPLYVALAQ 403
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
+ NL + L F G + + D + +S+G+ FV++ A+ A+D ++G
Sbjct: 137 IKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Query: 399 RMLDGRELRV 428
+L+ +++ V
Sbjct: 196 MLLNDKQVYV 205
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++ + V NL TT +DL+ F G++ + +D + S+GF FV F DA A+
Sbjct: 28 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAV 86
Query: 384 DTMDGRMLDGRELRVQMAR 440
++++G D +E V A+
Sbjct: 87 ESLNGHKFDDKEWYVGRAQ 105
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S L V NL + E L+ +F G V + RD S+G FV F +A EA+
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 190
Query: 387 TMDGRMLDGRELRVQMAR 440
+ G+M++ + L V +A+
Sbjct: 191 QLSGKMIESKPLYVAIAQ 208
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 45.6 bits (103), Expect = 5e-05
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 177 EDLRHESMA-WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 353
E+ + ES + +L + +++ T E L+ F + G++ + I RDR T +RGF F+ F
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 354 FERRDAEEALDTMDGRMLDGRELRVQMA 437
+ AE + MD ++DGR + + A
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAKKA 89
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/63 (30%), Positives = 40/63 (63%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
EDLR + E GE+ ++ + +DR + +S+G+AFV F + A++A++ + + G+ +R
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRC 189
Query: 429 QMA 437
++
Sbjct: 190 SLS 192
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V N+ T+ E L+ +F+R GEV I P + + R F FV + ER A +A+
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDT 351
Query: 393 DGRMLDGRELRVQMAR 440
+ ++G+ L V +A+
Sbjct: 352 ERYEVNGQPLEVVLAK 367
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGE-VGDIYIPRD-RYTRESRGFAFVRFFERRDAEEA 380
+RL + N+ T ++ R+V E G V +I + +D T +RGFAFV ++ A+ +
Sbjct: 196 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 255
Query: 381 LDTM 392
M
Sbjct: 256 RQKM 259
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 45.6 bits (103), Expect = 5e-05
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R ++ + + V +L+ T L F D + D+ T SRGF FV F ++
Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
Query: 366 DAEEALDTMDGRMLDGRELRVQMARYG 446
DA+ A++ M+G+ + R++R A G
Sbjct: 201 DAQTAINEMNGKWVSSRQIRCNWATKG 227
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 404
N+ + T L+ +F G + + R ++ + FV +F+RR A A+ T++GR
Sbjct: 69 NIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 405 LDGRELRVQMA 437
+ G+ ++V A
Sbjct: 125 IFGQPMKVNWA 135
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L + +++ T E LR F G+V + I RDR T +RGF F+ F + +E +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 390 MDGRMLDGRELRVQMA 437
MD ++DGR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L + +++ T E LR F G+V + I RDR T +RGF F+ F + +E +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 390 MDGRMLDGRELRVQMA 437
MD ++DGR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L + +++ T E LR F G+V + I RDR T +RGF F+ F + +E +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 390 MDGRMLDGRELRVQMA 437
MD ++DGR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V NL + + LR++FE G V + +P D T + +GF F++F + ++ A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 390 MDGRM-LDGRELRV 428
++G++ + GR ++V
Sbjct: 326 LNGKLEIAGRTIKV 339
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L++ TT + LR V + G + ++ + R T SRG+ FV + ++ A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 393 DGRMLDGRELRVQMAR 440
++DGRE+ V R
Sbjct: 126 HHSLIDGREIIVDYNR 141
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V L + + E L +F + G V ++Y+P+DR T + + F+ + DA+ A+ ++
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNM 88
Query: 399 RMLDGRELRVQMARYGRPLIAIQESL 476
L G+ +RV A + + + +L
Sbjct: 89 IKLHGKPIRVNKASQDKKSLDVGANL 114
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 300 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 437
I RD T SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 44.8 bits (101), Expect = 8e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L + NL + LR +F+ GEV + R T R FV FF+ RDA +AL M
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQV-----RETPCKREQRFVEFFDVRDAAKALRVM 239
Query: 393 DGRMLDGRELRVQMARYG 446
+G+++ G+ + +Q +R G
Sbjct: 240 NGKVISGKPMVIQFSRPG 257
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +3
Query: 195 SMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 374
S+ S++ V L+ T E L+ F G++ D + DR + SRGF FV + A
Sbjct: 32 SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91
Query: 375 EALDTMDGRMLDGRELRVQMARYG 446
A+ M + LDGR + V A G
Sbjct: 92 NAMQAMQNKELDGRIIGVHPADSG 115
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
++LR F +CGEV +++P DR T SRGFA++ D EAL + G + G + V
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHV 553
Query: 429 QMAR 440
+ +R
Sbjct: 554 EESR 557
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 404
NL+Y+ D+ F+ GEV D+ + +G+ + F +A++AL+ M+G++
Sbjct: 390 NLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALE-MNGKL 447
Query: 405 LDGRELRVQMA 437
L GR++R+ +A
Sbjct: 448 LLGRDVRLDLA 458
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 240 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 419
T EDL +F R G V + RD T +S +AF+ F + E+A MD ++D R
Sbjct: 254 TEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRR 313
Query: 420 LRVQMAR 440
+ V ++
Sbjct: 314 IHVDFSQ 320
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/87 (29%), Positives = 42/87 (48%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R ++ + + V +L+ T L F D + D+ T SRGF FV F ++
Sbjct: 132 REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Query: 366 DAEEALDTMDGRMLDGRELRVQMARYG 446
DA+ A+D + G+ L R++R A G
Sbjct: 192 DAQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N+ + T L+ VF G V + R +E + FV +F+RR A A+ +++G
Sbjct: 58 VGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSAGLAILSLNG 113
Query: 399 RMLDGRELRVQMA 437
R L G+ ++V A
Sbjct: 114 RHLFGQPIKVNWA 126
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL ++ +F + G V I + + G+AFV F + RDAE+A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 399 RMLDGRELRVQMARYGR 449
DG LRV++A GR
Sbjct: 68 YDFDGHRLRVELAHGGR 84
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL ++ +F + G V I + + G+AFV F + RDAE+A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 399 RMLDGRELRVQMARYGR 449
DG LRV++A GR
Sbjct: 68 YDFDGHRLRVELAHGGR 84
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL ++ +F + G V I + + G+AFV F + RDAE+A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 399 RMLDGRELRVQMARYGR 449
DG LRV++A GR
Sbjct: 68 YDFDGHRLRVELAHGGR 84
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V NL T E LR +F G + + RD + S+G FV F +A L+ M
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 393 DGRMLDGRELRVQMAR 440
+G+M+ G+ L V +A+
Sbjct: 389 NGKMVGGKPLYVALAQ 404
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +3
Query: 198 MAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 377
+A + V + TT E+L+ FE GE+ + + D+ T +G+ FV F R+ A E
Sbjct: 405 IAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGARE 464
Query: 378 ALDTMDGRM 404
AL + RM
Sbjct: 465 ALKRPEKRM 473
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+ L + N+ ++L F+ G V + D+ T S+ F FV + + A+ A+D
Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 387 TMDGRMLDGRELRVQMAR 440
M+GR L G++L+VQ+ R
Sbjct: 409 MMNGRHLGGKKLKVQLKR 426
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL T + L +F + G V + + RD R SRGF FV F +A++A++++ G
Sbjct: 206 VKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAKKAMESLCG 264
Query: 399 RMLDGRELRVQMA 437
L ++L V A
Sbjct: 265 LQLGSKKLFVGKA 277
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/81 (29%), Positives = 43/81 (53%)
Frame = +3
Query: 195 SMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 374
+M WS L V NL+ LR +F G++ + R S+GF FV F +++
Sbjct: 300 NMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGR-SKGFGFVCFSNCEESK 358
Query: 375 EALDTMDGRMLDGRELRVQMA 437
+A ++G ++DG+ + V++A
Sbjct: 359 QAKRYLNGFLVDGKPIVVRVA 379
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R ++ L V NL T L R+F G + + + +S+GF FV+F +
Sbjct: 105 RRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQ 162
Query: 366 DAEEALDTMDGRMLDGRELRV 428
A A + G M+ G++L V
Sbjct: 163 SAVSARSALHGSMVYGKKLFV 183
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V L + TT E+L+ FE GE+ + + D+ T ++GF FV F R+ A AL +
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEK 226
Query: 399 RM 404
RM
Sbjct: 227 RM 228
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPR---DRYTRESRGFAFVRFFERRDAEEALDT 389
V N+ Y T E LR + CGEVG + R DR T + +G+ F + + A A
Sbjct: 13 VGNIPYDATEEQLREI---CGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRN 69
Query: 390 MDGRMLDGRELRVQMA 437
+ ++GR+LRV A
Sbjct: 70 LQSYEINGRQLRVDFA 85
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++++ V L + T E LRR F++ G++ + + D+ T S+G+ FV F + A A
Sbjct: 23 FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 384 DTMDGRMLDGRELRVQMARYGR 449
++DGR +A GR
Sbjct: 83 -VDPTPIIDGRRANCNLASLGR 103
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 195 SMAWSR-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
S W+R + V NL ++ +F + G + DI + + G+AFV F + RDA
Sbjct: 2 SSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDA 58
Query: 372 EEALDTMDGRMLDGRELRVQMARYGR 449
++A+ DG DG LRV++A GR
Sbjct: 59 DDAIYGRDGYDFDGCRLRVEIAHGGR 84
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
+ L +F GE+ + +DR T S+G+ FV++ + + A A+ M+G +GR L V
Sbjct: 494 DGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
Query: 429 QMARYGRPLIA 461
++A P IA
Sbjct: 554 RIAGKSPPPIA 564
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
+ L +F GE+ + +DR T S+G+ FV++ + + A A+ M+G +GR L V
Sbjct: 494 DGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
Query: 429 QMARYGRPLIA 461
++A P IA
Sbjct: 554 RIAGKSPPPIA 564
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V + T ++L+ F + G V + + RD T SRGF FV F D+EE +D
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDE 165
Query: 390 M--DGRMLDGRELRVQMARYG 446
+ G M+D + +V + ++G
Sbjct: 166 LLSKGNMIDMADTQVSLYKWG 186
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/74 (25%), Positives = 41/74 (55%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ + L TT + F + GE+ D I RDR+T + RGF F+ F + ++ ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 390 MDGRMLDGRELRVQ 431
D +++G+++ ++
Sbjct: 79 -DTHVINGKQVEIK 91
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
E ++++ V L + T LR FE+ G++ + + D+ + S+G+ FV F + A
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAA 61
Query: 372 EEALDTMDGRMLDGRELRVQMARYG 446
++A ++DGR +A +G
Sbjct: 62 QKAC-VDPAPVIDGRRANCNLAAFG 85
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
E ++++ V L + T LR FE+ G++ + + D+ + S+G+ FV F + A
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAA 61
Query: 372 EEALDTMDGRMLDGRELRVQMARYG 446
++A ++DGR +A +G
Sbjct: 62 QKAC-VDPAPVIDGRRANCNLAAFG 85
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +3
Query: 183 LRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFER 362
+ H + +++ V L + T E L FER GE+ + D T+ S+GF FV F E
Sbjct: 1 MSHPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60
Query: 363 RDAEEALDTMDGRMLDGRELRVQMARYG 446
A A + +DGR + ++A G
Sbjct: 61 ESATRACEN-PNHTIDGRTVNCKLAYLG 87
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L + L+ T L+ F V + + ++ T SRG+ FV F A A+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 387 TMDGRMLDGRELRVQMARYGRPL-IAIQESL 476
M+G+ L+G + V +A+ L +++ ES+
Sbjct: 91 AMNGQELNGFNISVNVAKDWPSLPLSLDESI 121
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/77 (33%), Positives = 39/77 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL ++ +F + G V I + + G+AFV F + RDA++A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDG 67
Query: 399 RMLDGRELRVQMARYGR 449
DG LRV++A GR
Sbjct: 68 YDFDGHHLRVELAHGGR 84
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/77 (33%), Positives = 39/77 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL ++ +F + G V I + + G+AFV F + RDA++A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDG 67
Query: 399 RMLDGRELRVQMARYGR 449
DG LRV++A GR
Sbjct: 68 YDFDGHHLRVELAHGGR 84
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V NL ++ +F + G + DI + + + FV F RDAE+A+ DG
Sbjct: 11 VGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIKGRDG 67
Query: 399 RMLDGRELRVQMARYGR 449
LDG LRV++A GR
Sbjct: 68 YNLDGCRLRVELAHGGR 84
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V L T EDL++ F GE+ + IP +G FV+F R +AEEAL+ ++G
Sbjct: 310 VGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 399 RMLDGRELRVQMAR 440
++ + +R+ R
Sbjct: 364 TVIGKQTVRLSWGR 377
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V L T EDL++ F GE+ + IP +G FV+F R +AEEAL+ ++G
Sbjct: 308 VGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 399 RMLDGRELRVQMAR 440
++ + +R+ R
Sbjct: 362 TVIGKQTVRLSWGR 375
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 41.9 bits (94), Expect = 6e-04
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L + NL Y + ED++ +F G++ I DR R S+G A V F R DA A+
Sbjct: 108 TKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGR-SKGTAEVVFSRRGDALAAVK 166
Query: 387 TMDGRMLDGRELRVQM 434
+ LDG+ +++++
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 41.9 bits (94), Expect = 6e-04
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N Y T DL R+F++ G V DR +S G+AFV F + RDAE+A+ +D
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRV-------DRVDMKS-GYAFVYFEDERDAEDAIRKLDN 57
Query: 399 RML--DGRELRVQMAR--YGRP 452
+ R L V+ A+ GRP
Sbjct: 58 FPFGYEKRRLSVEWAKGERGRP 79
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 291 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 446
D + D+ T SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 231
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 404
N+ + T L+ +F G + + R ++ + FV +F+RR A A+ T++GR
Sbjct: 69 NIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 405 LDGRELRVQMA 437
+ G+ ++V A
Sbjct: 125 IFGQPMKVNWA 135
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 404
L++VF G+V ++ I + TR+S G+ +V F + DA+ A++ M+G++
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
EDLR+ F + GEV + IP +G FV+F +R+ AE+A+++++G ++ +R+
Sbjct: 335 EDLRQPFSQFGEVVSVKIP------VGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRL 388
Query: 429 QMAR 440
R
Sbjct: 389 SWGR 392
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 407
L F GEV + + R++ T +S G+ FV F R AEE L G ++
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVM 174
Score = 36.3 bits (80), Expect = 0.028
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 395
V +L+ T L F +R V + D T S+G+ FVRF + + AL M+
Sbjct: 206 VGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Query: 396 GRMLDGRELRVQMARYGRPLIAIQE 470
G R++RV +A R + Q+
Sbjct: 266 GAYCSNRQMRVGIATPKRAIANQQQ 290
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/71 (29%), Positives = 42/71 (59%)
Frame = +3
Query: 228 LTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 407
L+ TT + LR++F + +D+ T+ +GF F+ F DA++AL ++G+++
Sbjct: 78 LSAYTTDQSLRQLFAPFAR-----LIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 408 DGRELRVQMAR 440
+GR + V+ A+
Sbjct: 133 NGRLIFVETAK 143
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-- 383
+L + +++ T+ + LR F GEV + I +DR T +RGF FV F + AE +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 384 -DTMDGRMLDGRE 419
+DG++++ ++
Sbjct: 67 KHIIDGKIVEAKK 79
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-- 383
+L + +++ T+ + LR F GEV + I +DR T +RGF FV F + AE +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 384 -DTMDGRMLDGRE 419
+DG++++ ++
Sbjct: 67 KHIIDGKIVEAKK 79
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-- 383
+L + +++ T E L+ F GEV + I +DR T +RGF FV F + AE +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 384 -DTMDGRMLDGRE 419
+DGR+++ ++
Sbjct: 67 KHNIDGRLVEAKK 79
Score = 35.5 bits (78), Expect = 0.049
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++ V L T D + FE+ G D+ + D T+ RGF F+ + D+EEA++
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVE 163
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-- 383
+L + +++ T E L+ F GEV + I +DR T +RGF FV F + AE +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 384 -DTMDGRMLDGRE 419
+DGR+++ ++
Sbjct: 67 KHNIDGRLVEAKK 79
Score = 35.5 bits (78), Expect = 0.049
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++ V L T D + FE+ G D+ + D T+ RGF F+ + D+EEA++
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVE 163
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/59 (28%), Positives = 35/59 (59%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++L V ++ T D+R+VFE+ G V +I +P+D+ T E + F+++ + + A+
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V L +TT ++ VF R G + DIY+ D + RG+AFV+F + A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDM-KICRGYAFVQFSCKEMALAAIKA 266
Query: 390 MDG 398
++G
Sbjct: 267 LNG 269
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V L+ TT E+ + FER G D+ + D T RGF FV ++ D+ E +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVT-YDSEDSVEVVMQ 179
Query: 390 MDGRMLDGRELRVQMA 437
+ L + + V+ A
Sbjct: 180 SNFHELSDKRVEVKRA 195
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V + T+ E L++ F R G V + + +++ T + RGF FVRF D +AL
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-- 64
Query: 390 MDGRMLDGRELRVQMA 437
D + G+ + V+ A
Sbjct: 65 RDTHFILGKPVDVRKA 80
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L + NL Y ED++ +F GE+ + DR R S+G A V + R DA A+
Sbjct: 86 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVK 144
Query: 387 TMDGRMLDGRELRVQM 434
+ LDG+ +++++
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L + NL Y ED++ +F GE+ + DR R S+G A V + R DA A+
Sbjct: 22 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVK 80
Query: 387 TMDGRMLDGRELRVQM 434
+ LDG+ +++++
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
++L + NL Y ED++ +F GE+ + DR R S+G A V + R DA A+
Sbjct: 88 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVK 146
Query: 387 TMDGRMLDGRELRVQM 434
+ LDG+ +++++
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA- 380
++++ V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E A A
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 381 LDTMDGRMLDGRELRVQMARYG 446
+D ++DGR +A G
Sbjct: 72 VDATP--VIDGRRANCNLASLG 91
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA- 380
++++ V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E A A
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 381 LDTMDGRMLDGRELRVQMARYG 446
+D ++DGR +A G
Sbjct: 72 VDATP--VIDGRRANCNLASLG 91
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA- 380
++++ V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E A A
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 381 LDTMDGRMLDGRELRVQMARYG 446
+D ++DGR +A G
Sbjct: 72 VDATP--VIDGRRANCNLASLG 91
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L V +++ T + LR F GEV + RD+ T RGF FV F + + L
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL-- 64
Query: 390 MDGRMLDGRELRVQMA 437
+ +D RE+ V+ A
Sbjct: 65 QEKHSIDTREVDVKRA 80
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V + T ++L+ F + G V + + RD T SRGF FV F D+EE +D
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDE 165
Query: 390 M--DGRMLDGRELRVQMAR 440
+ G M+D + +V++ +
Sbjct: 166 LLSKGNMIDMADTQVEIKK 184
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/74 (25%), Positives = 41/74 (55%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ + L TT + F + GE+ D I RDR+T + RGF F+ F + ++ ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 390 MDGRMLDGRELRVQ 431
D +++G+++ ++
Sbjct: 79 -DTHVINGKQVEIK 91
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +3
Query: 177 EDLRHESMAWSR-LKVDNLTYRTTPEDLRRVFE-RCGEVGDIYIPRDRYTRESRGFAFVR 350
E E ++ SR + V N+ Y E + F +CG V ++ + D TR +G AFV
Sbjct: 433 ESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVT 492
Query: 351 FFERRDAEEALDTMDGRMLDGRELRVQM 434
F + +A+ + G M R ++V+M
Sbjct: 493 FATKESVGKAV-ALSGTMFYSRPIKVRM 519
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++ L + NL + + E L +F G+V + +D + ESRGFAF+ F A A+
Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAM 74
Query: 384 DTMDGRMLDGRELRVQ 431
MDGR++ + L VQ
Sbjct: 75 LHMDGRLIGQKILCVQ 90
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
+ NL T ED+R ++ GE+ I D+ R S G A V + R DA +A+ +
Sbjct: 111 ITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPS-GSAEVVYMRRSDAIQAMRKYNN 169
Query: 399 RMLDGRELRVQM 434
+LDGR +++++
Sbjct: 170 VLLDGRPMKLEI 181
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
S + V L T EDL + F GEV + IP +G FV+F R+ AEEA+
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIG 380
Query: 387 TMDGRMLDGRELRVQMAR 440
++G ++ +R+ R
Sbjct: 381 NLNGTVIGKNTVRLSWGR 398
Score = 35.1 bits (77), Expect = 0.065
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 437
D T S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +3
Query: 243 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 422
T DL+ GEV ++ I R++ + + +G+AFV F + A EA+DT++ G+ +
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Query: 423 R 425
+
Sbjct: 164 K 164
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L + NL + LR++F+ G + ++ R T + FV F++ RDA A D M
Sbjct: 215 LVIFNLDPEVSSITLRQIFQVYGPIKEL-----RETPYKKHQRFVEFYDVRDAARAFDRM 269
Query: 393 DGRMLDGRELRVQMARYG 446
+G+ + G+++ ++ +R G
Sbjct: 270 NGKEIGGKQVVIEFSRPG 287
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V L TT + + F + GE+ D I +DR T + RGF FV + + ++ +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-- 100
Query: 390 MDGRMLDGRELRVQ 431
D ++ G+++ ++
Sbjct: 101 QDNHIIIGKQVEIK 114
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 249 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM-LDGRELR 425
++ + F + GE+ + I RD T SRGF FV +E D + L R+ L G ++
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVT-YESEDMVDHLLAKGNRIELSGTQVE 202
Query: 426 VQMARYGRP 452
++ A +P
Sbjct: 203 IKKAEPKKP 211
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
SR+ V NL R T +L F G V +++ R G+AF+ F + RDA +A+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56
Query: 387 TMDGR 401
+DG+
Sbjct: 57 ALDGK 61
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R E + S L + NL E L+ +F G V + + SRGF FV +
Sbjct: 321 RFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPE 379
Query: 366 DAEEALDTMDGRMLDGRELRVQMAR 440
+A A+ M+G+M+ + L V +A+
Sbjct: 380 EALLAMKEMNGKMIGRKPLYVALAQ 404
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +3
Query: 201 AWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 380
+++ + V NL T ++L++ F + G++ + +D+ + SR F FV F A A
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVA 281
Query: 381 LDTMDGRMLDGRELRVQMAR 440
++ M+G L L V A+
Sbjct: 282 VEKMNGISLGEDVLYVGRAQ 301
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
+ NL + L F G + + D R S+G+ FV+F + A+ A+D ++G
Sbjct: 136 IKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKGYGFVQFEKEETAQAAIDKLNG 194
Query: 399 RMLDGRELRV 428
+L+ +++ V
Sbjct: 195 MLLNDKQVFV 204
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
SR+ V NL R T +L F G + +++ R G+AF+ F + RDA +A+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
Query: 387 TMDGR 401
+DG+
Sbjct: 57 EVDGK 61
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 380
++++ V L + T E L F+R GE+ + + DR T S+G+ FV F +DAE A
Sbjct: 12 FTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF---KDAESA 67
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
E+ + L V+NL + E+L +F GE+ ++ R T ++ FF+ R A
Sbjct: 290 ENSSEGALWVNNLDSSISNEELHGIFSSYGEIREV-----RRTMHENSQVYIEFFDVRKA 344
Query: 372 EEALDTMDGRMLDGRELRV 428
+ AL ++G + GR+L++
Sbjct: 345 KVALQGLNGLEVAGRQLKL 363
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 324 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 431
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
+ N+ R + L + + G V D++IPRD+ T + +GFAF + A+ A+ G
Sbjct: 11 IGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 330 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRP 452
R +AFV F + RDA++A +DGR DG + V+ +R G P
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR-GAP 42
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
+L + +++ T LR F GEV + + R++ T RGF FV F + + L
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-- 64
Query: 390 MDGRMLDGRELRVQMA 437
D +D R++ V+ A
Sbjct: 65 QDKHHIDNRDVDVKRA 80
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 264 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 431
+F+ G V + + R+ T ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 127 MFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 243 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 422
T +DL+ VF + GE+ + IP + FV++ R AE+AL ++G L G+ +
Sbjct: 290 TEDDLKSVFGQFGELVHVKIP------AGKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343
Query: 423 RVQMAR 440
R+ R
Sbjct: 344 RLSWGR 349
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 300 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRPL 455
+ DR T S+G+ FVRF + + A+ M+G+ R +R A +PL
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +3
Query: 186 RHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERR 365
R E + L + NL E L+ +F G V + + SRGF FV +
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPE 383
Query: 366 DAEEALDTMDGRMLDGRELRVQMAR 440
+A AL M+G+M+ + L + +A+
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQ 408
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +3
Query: 204 WSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 383
++ + V NL ++LR+ F + G + + RD+ + SR F FV F A A+
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAV 286
Query: 384 DTMDGRMLDGRELRVQMAR 440
+ M+G L L V A+
Sbjct: 287 EKMNGISLGDDVLYVGRAQ 305
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
+ NL + L F G + + D T S+G+ FV+F + A+ A+D ++G
Sbjct: 140 IKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 399 RMLDGRELRV 428
+++ +++ V
Sbjct: 199 MLMNDKQVFV 208
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 330 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRP 452
R +AFV F + RDA++A +DGR DG + V+ +R G P
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR-GAP 42
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.7 bits (81), Expect = 0.021
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+ L V +LT TT DL +F R G++ I + Y+ SRGFAF+ + +A A +
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITV----YS--SRGFAFIYYRHVEEAVAAKE 71
Query: 387 TMDGRMLDG 413
+ G L+G
Sbjct: 72 ALQGANLNG 80
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V + + +DL F + G++ D R+R T AF+ ++E DA +A +M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT------AFIDYYEMDDALQA-KSM 304
Query: 393 DGRMLDGRELRVQMARYGRP 452
+G+ + G LRV R P
Sbjct: 305 NGKPMGGSFLRVDFLRSQAP 324
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V + T ED+ F GE+ ++ + DR + +G+A + + ++ +A+ A+ M+G
Sbjct: 99 VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
Query: 399 RMLDGRELRVQMA 437
L + + V A
Sbjct: 159 AELLTQNVSVDWA 171
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 35.9 bits (79), Expect = 0.037
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD--- 395
N Y DL R+F + G+V +R ++ GFAFV + RDAE+A+ +D
Sbjct: 8 NFEYDARESDLERLFRKYGKV-------ERVDMKA-GFAFVYMEDERDAEDAIRALDRFE 59
Query: 396 -GRMLDGRELRVQMARYGR 449
GR GR LRV+ + R
Sbjct: 60 YGR--TGRRLRVEWTKNDR 76
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 240 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 419
T DL R FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDATNSSKLMDKV 159
Query: 420 LRVQMA 437
+ V+ A
Sbjct: 160 ISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 35.9 bits (79), Expect = 0.037
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD--- 395
N Y DL R+F + G+V +R ++ GFAFV + RDAE+A+ +D
Sbjct: 8 NFEYDARESDLERLFRKYGKV-------ERVDMKA-GFAFVYMEDERDAEDAIRALDRFE 59
Query: 396 -GRMLDGRELRVQMARYGR 449
GR GR LRV+ + R
Sbjct: 60 YGR--TGRRLRVEWTKNDR 76
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 240 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 419
T DL R FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDATNSSKLMDKV 159
Query: 420 LRVQMA 437
+ V+ A
Sbjct: 160 ISVEYA 165
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R+ V L Y T +R + E G + + +DR T S+G+AF + + + A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 390 MDGRMLDGRELRVQMARYGRPL 455
++G + + L V+ A G L
Sbjct: 420 LNGIKMGDKTLTVRRANQGTML 441
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R+ V L Y T +R + E G + + +DR T S+G+AF + + + A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 390 MDGRMLDGRELRVQMARYGRPL 455
++G + + L V+ A G L
Sbjct: 420 LNGIKMGDKTLTVRRANQGTML 441
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R+ V L Y T +R + E G + + +DR T S+G+AF + + + A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 390 MDGRMLDGRELRVQMARYGRPL 455
++G + + L V+ A G L
Sbjct: 420 LNGIKMGDKTLTVRRANQGTML 441
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 35.9 bits (79), Expect = 0.037
Identities = 26/88 (29%), Positives = 40/88 (45%)
Frame = +3
Query: 177 EDLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 356
ED R + L V NL + +L F R GE+ + + R +AFV F
Sbjct: 13 EDGRGRNPPSRHLWVGNLPHGILERELADRFLRFGELESLAF------QPGRSYAFVNFN 66
Query: 357 ERRDAEEALDTMDGRMLDGRELRVQMAR 440
DA A++++ G L G LR++ A+
Sbjct: 67 HDEDAFAAIESLQGFPLSGNPLRIEFAK 94
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 35.5 bits (78), Expect = 0.049
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
RL +L + L + F R + RD+ T +++G+ FV F D AL
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 390 MDGRMLDGRELRVQMARY 443
M+G+ + R ++++ + +
Sbjct: 198 MNGKYVGNRPIKLRKSSW 215
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.065
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 279 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
G V + DR T S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 35.1 bits (77), Expect = 0.065
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V ++ T E L +F CG+V D I D ++ FAFV F + + A EAL ++ G
Sbjct: 145 VSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHS--VLRFAFVEFADDQGAHEAL-SLGG 201
Query: 399 RMLDGRELRV 428
ML +RV
Sbjct: 202 TMLGFYPVRV 211
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 35.1 bits (77), Expect = 0.065
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 219 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
V N Y T DL R+F + G V R +S G+AFV F + RDAE+A+ D
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRV-------KRVDMKS-GYAFVYFEDERDAEDAIRRTDN 57
Query: 399 RML--DGRELRVQMAR 440
R+L V+ A+
Sbjct: 58 TTFGYGRRKLSVEWAK 73
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 237 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD-TMDGRMLD 410
RT D+ R FE G+V ++ R R FAFV+F + DA +ALD T + ++LD
Sbjct: 106 RTRERDMERHFEPYGKVLNV--------RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 35.1 bits (77), Expect = 0.065
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 192 ESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 371
E + ++ V L + T + L F++ GE+ D D+ + +S+G+ F+ F R A
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGA 182
Query: 372 EEAL 383
AL
Sbjct: 183 RNAL 186
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD- 386
++ V N++ P+ L F R GE+ + + D+ T +GFA + A++AL+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 387 ---TMDGRML 407
T +G +L
Sbjct: 288 PHKTFEGHVL 297
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+R+ V NL R T +L F+ G + ++++ R G+AF+ F + RDA +A+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAIS 56
Query: 387 TMD 395
+D
Sbjct: 57 ALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 207 SRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
+R+ V NL R T +L F+ G + ++++ R G+AF+ F + RDA +A+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAIS 56
Query: 387 TMD 395
+D
Sbjct: 57 ALD 59
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.086
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 225 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD--- 395
N Y DL R+F + G+V +R ++ GFAFV + RDAE+A+ +D
Sbjct: 8 NFEYDAREGDLERLFRKYGKV-------ERVDMKA-GFAFVYMEDERDAEDAIRALDRFE 59
Query: 396 -GRMLDGRELRVQMARYGR 449
GR GR LRV+ + R
Sbjct: 60 FGR--KGRRLRVEWTKSER 76
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 240 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 419
T DL + FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDASNNSKLMDKV 160
Query: 420 LRVQMA 437
+ V+ A
Sbjct: 161 ISVEYA 166
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.086
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
R+ V L Y T +R + E G + + +DR T S+G+AF + + + A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 390 MDGRMLDGRELRVQMARYG 446
++G + + L V+ A G
Sbjct: 436 LNGIKMGDKTLTVRRAIQG 454
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +3
Query: 180 DLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 359
++ E ++ V L + T E L F++ GE+ D D+ + +S+G+ F+ +
Sbjct: 131 EVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 360 RRDAEEALDTMDGRMLDGRELRVQMARYG 446
R A AL + + R Q+A G
Sbjct: 191 RSGARNAL-KQPQKKIGSRMTACQLASKG 218
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V N+ P+ L F + GE+ + + D+YT +GF + A+ AL+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 390 MDGRMLDGRELRVQMA 437
+ +G L Q A
Sbjct: 306 -PHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +3
Query: 180 DLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 359
++ E ++ V L + T E L F++ GE+ D D+ + +S+G+ F+ +
Sbjct: 131 EVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 360 RRDAEEALDTMDGRMLDGRELRVQMARYG 446
R A AL + + R Q+A G
Sbjct: 191 RSGARNAL-KQPQKKIGSRMTACQLASKG 218
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V N+ P+ L F + GE+ + + D+YT +GF + A+ AL+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 390 MDGRMLDGRELRVQMA 437
+ +G L Q A
Sbjct: 306 -PHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +3
Query: 180 DLRHESMAWSRLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 359
++ E ++ V L + T E L F++ GE+ D D+ + +S+G+ F+ +
Sbjct: 131 EVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Query: 360 RRDAEEALDTMDGRMLDGRELRVQMARYG 446
R A AL + + R Q+A G
Sbjct: 191 RSGARNAL-KQPQKKIGSRMTACQLASKG 218
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V N+ P+ L F + GE+ + + D+YT +GF + A+ AL+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 390 MDGRMLDGRELRVQMA 437
+ +G L Q A
Sbjct: 306 -PHKTFEGHILHCQKA 320
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L + TT ++ V + G V +I +R + +S+G+ V F++ A + M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 393 DGRMLDGRELRVQMA 437
+G + +G+ V A
Sbjct: 264 NGFIFNGKACVVAFA 278
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 237 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD-TMDGRMLD 410
RT D+ R FE G+V ++ R R FAFV+F + DA +ALD T + ++LD
Sbjct: 80 RTRERDMERHFEPYGKVLNV--------RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 264 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 434
+ E CG V D T++ +GF F F A+ + R +DG+EL V +
Sbjct: 222 ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNV 278
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 252 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 413
+L+++F CGE+ D++IP R AF+ F A++AL ++G + G
Sbjct: 42 ELKKLFSPCGEITDVHIPETR-NSSLWSHAFIYFVGEGTADKALQ-LNGSDMGG 93
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 32.3 bits (70), Expect = 0.46
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Frame = +3
Query: 147 EYLYYSK*VTEDLRHESMAWSRLKVDNLTYRTTPEDLRRV----FERCGEVGDIYIPRDR 314
E +Y+++ +D H ++ S L V +++ F CG+V IY+P
Sbjct: 97 EPIYHNECNFDDKAHLGVSDSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIAC 156
Query: 315 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 437
T S G+AF+ + ++ + L T++G L GR++ V A
Sbjct: 157 STGASVGYAFI---DMKNETKGL-TLNGSHLGGRKIDVMFA 193
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.60
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 330 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 434
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRPLIAIQESLRS 482
DR T ++G+ FVRF + + A+ M+G R +R+ A + + ++S +S
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQS 247
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRPLIAIQESLRS 482
DR T ++G+ FVRF + + A+ M+G R +R+ A + + ++S +S
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQS 247
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.80
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V L R +D+R F GE+ I I D + AFV + R AE+A +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVTYTSREGAEKAAQEL 283
Query: 393 DGRM-LDGRELRVQMARYGRP 452
R+ ++G+ L++ +GRP
Sbjct: 284 SNRLVINGQRLKL---TWGRP 301
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V +L + TT +L + G V ++ ++ + +S+G+ V F++ A D +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 393 DGRMLDGRELRVQMA 437
+G +GR V+ A
Sbjct: 296 NGYPFNGRPCVVEYA 310
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 437
D T S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 151 DPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 309 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 428
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 213 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 392
L V NL+ RT + + F+ EV + + + + E G FV F +A++AL M
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVN-HRGEHVGCGFVEFASVNEAQKALQKM 549
Query: 393 DGRMLDGREL 422
+G L RE+
Sbjct: 550 NGENLRSREI 559
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 231 TYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML- 407
+Y ED+ F + G+V + +P R+ ESR F+ V E E+A + M ++
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMP--RHVAESRIFSGVALVEFPTEEDAQNVMKQNLVF 181
Query: 408 DGRELRVQ 431
G+EL ++
Sbjct: 182 AGQELELK 189
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V N+ + + L F G+V + + D+ T +SRGFA + A+ AL
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL-A 226
Query: 390 MDGRMLDGRELRVQMARYGR 449
+++DG+ L ++A G+
Sbjct: 227 DPVKVIDGKHLNCKLAVDGK 246
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +3
Query: 210 RLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 389
++ V N+ + + L F G+V + + D+ T +SRGFA + A+ AL
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL-A 226
Query: 390 MDGRMLDGRELRVQMARYGR 449
+++DG+ L ++A G+
Sbjct: 227 DPVKVIDGKHLNCKLAVDGK 246
>At1g63610.2 68414.m07192 expressed protein
Length = 341
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 396 RPSCPGLLQRHDARKTSRRRILYFPLCTDLWEC 298
RP CP L H+ + ++ + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g63610.1 68414.m07191 expressed protein
Length = 340
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 396 RPSCPGLLQRHDARKTSRRRILYFPLCTDLWEC 298
RP CP L H+ + ++ + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
L + F+ CGE+ +Y+P D + AF+R E AE+ + G
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLR-IEGEGAEDKALQLSG 179
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 413
L + F CGE+ IY+PRD + + +F+ + + AE+ + G + G
Sbjct: 44 LTKHFASCGEITQIYVPRDFKKKILKSVSFM-WIKGEGAEDKALQLSGTDVGG 95
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = -3
Query: 414 CRPTFVRPSCPGLLQRHDARKTSRRRILYFPLCTDLWECRYHQLLRTFRKRGVSLQASFG 235
C TFV C +LQ SR++++ + ++L+E HQ +T R + + ++F
Sbjct: 3664 CATTFVT-QCLEILQVLSKHPRSRKQLVAAGILSELFENNIHQGPKTARAQARAALSTFS 3722
Query: 234 R*DYLLLNE 208
D +NE
Sbjct: 3723 EGDLSAVNE 3731
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 327 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRP 452
S F F + RDA++A +DGR DG + V+ +R G P
Sbjct: 13 SSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSR-GAP 53
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 240 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 419
T DL + FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 68 TRTRDLEKHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDASNNSKLMDKV 119
Query: 420 LRVQMA 437
+ V+ A
Sbjct: 120 ISVEYA 125
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 306 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 398
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 31
>At5g53700.1 68418.m06672 hypothetical protein
Length = 248
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 386
L + F CG++ DI +PRD R + F+ F ++ E +D
Sbjct: 38 LAKHFASCGKIVDIDVPRDFKKRILKSPLFI-IFHAKEGESPVD 80
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 255 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 431
L + F CGE+ +++PR+ T +GF A++AL+ + G + G+EL V+
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF---------KAKKALE-LSGSKMTGKELVVK 412
>At3g04260.1 68416.m00450 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 913
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 318 CTDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLNETMPSIRGG 184
C + W+ + +LLRT + G+ + DY+ + E + +I G
Sbjct: 482 CLEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKG 526
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 217 K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 324
K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 239 KWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,478
Number of Sequences: 28952
Number of extensions: 256999
Number of successful extensions: 962
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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