Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F21
         (1001 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.74 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    29   5.2  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 606 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 728
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -1

Query: 794 DGXAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPG 615
           D   H  AW+ R  P    ++ +  K  ++ K E + G     G+E+       +G+T  
Sbjct: 92  DQLKHDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRN 151

Query: 614 IF 609
            F
Sbjct: 152 SF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,622
Number of Sequences: 27780
Number of extensions: 381354
Number of successful extensions: 962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)