Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F20
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 713 TASQPIQYVQNNQRSKLPLQLLFCTRYQIKYCPXL 817
           ++SQP+Q  Q N    LP+  +  T   + Y P +
Sbjct: 815 SSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVI 849


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 675  QFQDHHKVNQ*HQLHH--SLFNMYKITRGQSCPCSSCFVQD 791
            Q Q   +  Q  QL+H   L N+Y +   +   C S  + D
Sbjct: 1454 QQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLIVD 1494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,245
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)