Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F19
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14973-1|AAA85661.1|   56|Homo sapiens ribosomal protein S29 pro...   108   2e-23
L31610-1|AAB27426.1|   56|Homo sapiens protein ( Homo sapiens (c...   108   2e-23
BC035313-1|AAH35313.1|   56|Homo sapiens ribosomal protein S29 p...   108   2e-23
BC032813-1|AAH32813.1|   56|Homo sapiens ribosomal protein S29 p...   108   2e-23
AB061847-1|BAB79485.1|   56|Homo sapiens ribosomal protein S29 p...   108   2e-23
AB007165-1|BAA25827.1|   26|Homo sapiens ribosomal protein S29 p...    54   9e-07

>U14973-1|AAA85661.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score =  108 bits (260), Expect = 2e-23
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MGH  +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>L31610-1|AAB27426.1|   56|Homo sapiens protein ( Homo sapiens
           (clone cori-1cl5) S29 ribosomal protein mRNA, complete
           cds. ).
          Length = 56

 Score =  108 bits (260), Expect = 2e-23
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MGH  +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>BC035313-1|AAH35313.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score =  108 bits (260), Expect = 2e-23
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MGH  +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>BC032813-1|AAH32813.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score =  108 bits (260), Expect = 2e-23
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MGH  +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>AB061847-1|BAB79485.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score =  108 bits (260), Expect = 2e-23
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MGH  +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>AB007165-1|BAA25827.1|   26|Homo sapiens ribosomal protein S29
           protein.
          Length = 26

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = +1

Query: 208 GLIRKYGLNICRQCFREYAHDIGFKK 285
           GLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1   GLIRKYGLNMCRQCFRQYAKDIGFIK 26


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,221,801
Number of Sequences: 237096
Number of extensions: 1393647
Number of successful extensions: 5335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5335
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)