Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F19
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)            95   5e-20
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo...    95   5e-20
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo...    95   5e-20
At3g12210.2 68416.m01524 expressed protein                             31   1.3  
At3g12210.1 68416.m01523 expressed protein                             31   1.3  

>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
          Length = 56

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g12210.2 68416.m01524 expressed protein
          Length = 209

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 224 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 117
           + RIK PCLL    HDRDP PYL   E  Q+  W + R
Sbjct: 38  FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71


>At3g12210.1 68416.m01523 expressed protein
          Length = 155

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 224 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 117
           + RIK PCLL    HDRDP PYL   E  Q+  W + R
Sbjct: 38  FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,001,058
Number of Sequences: 28952
Number of extensions: 188714
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)