Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F18
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.056
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    28   1.6  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   4.8  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   8.5  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   8.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +1

Query: 175 SAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 348
           S PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 290 SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 33.1 bits (72), Expect = 0.056
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +1

Query: 175 SAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 348
           S PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 344 SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 517 PHLLAVSLYNQIFDFHLTHIMSQICIEAKYFLRY 618
           P+  ++S+YNQI D +   I  +      YFLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 253 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 345
           PP++TS  S+G G  P+   G+S    NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 182 PRXVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKRPTAL 319
           P+ +   TS+ PN    GPD  P  Q  +  S   K +S+  P AL
Sbjct: 18  PKSLAGSTSNIPNELFVGPDGRPLSQNAQGAS---KSSSKVVPQAL 60


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 552 LRFSFNSHYVTNMYRG*VF--LE---VRFRLPF*NSA-IVIKDAQNNVCFLLCLL 698
           L+F      +TN Y   ++  LE   ++FR+P  +   I++KD   N CFL  LL
Sbjct: 697 LKFFVRERSITNKYEDILYKILEACFMQFRIPIQHVLNILVKDGTLNFCFLKPLL 751


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 240 TPCRSTKRNEHFQPRTRRRAESDQRHFSSDQRSVYS*GESGATDSAGGP 386
           TP   T   +  QPR RR+A      F+ + +   +   +   D+ G P
Sbjct: 60  TPRERTVNKKADQPRRRRQAPQGNEAFAREGKEARANNAAHPVDATGAP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,810
Number of Sequences: 5004
Number of extensions: 54861
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)