Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F18
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318... 31 0.95
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 31 1.3
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 30 2.2
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290... 30 2.9
01_07_0082 - 40965947-40967023 30 2.9
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 29 5.1
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 6.7
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 28 8.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.9
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 28 8.9
03_06_0519 - 34481751-34482722 28 8.9
03_01_0280 + 2152000-2153510,2153633-2153732 28 8.9
>06_01_0450 +
3185342-3185645,3185761-3185837,3185948-3186028,
3186508-3186636,3186765-3186851,3186962-3187015,
3187432-3187522,3187615-3187685,3187770-3187839,
3187988-3188040,3188132-3188225,3188569-3188666,
3190126-3190209
Length = 430
Score = 31.5 bits (68), Expect = 0.95
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 175 SAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQS 342
+AP GGH + +P R ++ + T+T S G G +P G + A G S
Sbjct: 19 AAPATGGHVTVTARKPRGRRLSGKST--TTTTTASLGCGSKPNNIRGATAAAGGGS 72
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 223 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 333
+ P+ G A P A STF H Q P ATN +++ N
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQN 620
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 223 EPPRTGRRAVPPS--ATSTFSHGQGDEPKATNGTSVATNGQST 345
+ PR+G ++ S A ST +HGQ + G + +N QST
Sbjct: 410 QSPRSGGTSLNSSGFAASTVNHGQSSVVRTQGGNGIPSNNQST 452
>08_01_0322 -
2898272-2898475,2898548-2898730,2898817-2899702,
2902070-2902374
Length = 525
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 160 YQAGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHG 285
++ C+APP GG + S PE R GRR PP T + G
Sbjct: 36 HRCSCAAPPRGGRVPGW-SSPE-RRRGRRKRPPERTPPVTLG 75
>01_07_0082 - 40965947-40967023
Length = 358
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 169 GCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 315
G + PP G+ + ++P PP+ G PP + + G G P+A G
Sbjct: 253 GTAPPPQYGYG--YPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 149 RSSSIKQGAPPPRXVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKE--TSRKRPTALQ 322
+S+ + G PP R + S T + P P A + TDK +S + P A+Q
Sbjct: 570 KSALLGSGGPPSRPSSLMASLTHTPAQTAPSPKPVSAAPAVVPVTDKAAGSSHEMPAAVQ 629
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 220 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 336
P PP A PP S + +G G P G +VA G
Sbjct: 167 PPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGG 205
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -3
Query: 683 ETHIVLSIFDHNCRILKGQPEAYLKKYLASIH 588
ET + ++I+DHN I+ +P + ++ ++ +IH
Sbjct: 87 ETPLKVAIYDHNNEIMTCEPFSSMRVHIVAIH 118
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 181 PPXGGHTNIFDSEPEPPRTGRRAV-PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 348
PP G N F + P PP R + P+ +T S G P + TNG P
Sbjct: 653 PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVP 709
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 152 SSSIKQGAPPPRXVVTLTSSTPNRSHRGPDAVPFHQAQRALSATD 286
S++ +PPP V+ +T S S+ A +H R L+ATD
Sbjct: 46 STTSSSPSPPPTSVLPVTESRLAASYAAVPAREWHALLRELAATD 90
>03_06_0519 - 34481751-34482722
Length = 323
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 164 KQGAPPPRXVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRK 304
K+GA P + T +T RS R A P H A+ S+T+ S +
Sbjct: 26 KRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>03_01_0280 + 2152000-2153510,2153633-2153732
Length = 536
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 587 YVSRLS---IS*GTLPVALLKFCNCDQRCSKQCVFPTLPFEMINVVLSASDARIGCI 748
+VSR S + LP+ L F +RC+ Q VF L F+M ++ S D GC+
Sbjct: 146 FVSRCSSDKVENALLPL-LSHFAGTGERCNLQDVFMRLTFDMSTMLASGEDP--GCL 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,040
Number of Sequences: 37544
Number of extensions: 410894
Number of successful extensions: 1333
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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