Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F18
         (907 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       29   5.2  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             29   5.2  
SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 SSSIKQGAPPPRXVVTLTSSTPN 220
           SSSI    PP R V T  SSTPN
Sbjct: 389 SSSISMSLPPARPVTTTASSTPN 411


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 253 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 348
           PPS++S      G+    TNG S   NG++TP
Sbjct: 103 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 134


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 253 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 348
           PPS++S      G+    TNG S   NG++TP
Sbjct: 775 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 806


>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 169 GCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 348
           G + P  G  T +  + P  P  G   VPP+  +  S+G       +NGT+V TNG + P
Sbjct: 116 GTTVPSNG--TTVPYNGPTVPSNGA-TVPPNGATVPSNGT---TVPSNGTTVPTNGTTVP 169


>SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 136 LASMTELVYQAGCSAPPXGGHTNIFDSE---PEPPRTGRRAVPPSATSTFSHGQ 288
           L+S  E  Y+   +  P GG   + DS    P PP  G+  +P    S   +GQ
Sbjct: 202 LSSFGEACYECALAKIPTGG-VPLVDSNNTTPTPPSVGQPVLPAGGVSQQGYGQ 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,453,174
Number of Sequences: 59808
Number of extensions: 434550
Number of successful extensions: 1263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)