Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F18
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    36   0.053
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    32   0.49 
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    32   0.49 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    31   1.1  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 142 SMTELVYQAGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTS 321
           S+ E VY      PP  G+   F + P  P +    VPP A S F    G +P  T+ T+
Sbjct: 313 SLKEQVYGKPNPPPPSAGY--FFQAPPPAPASSSSTVPP-AVSPFGVPLGAQPSTTSSTT 369

Query: 322 VATN 333
            ++N
Sbjct: 370 YSSN 373


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 213 LRTGATEDRTPCRSTKRNEHFQPRTRRRAESDQRHFSSDQRSVYS*GE 356
           L  G TE+ T   +T RNE  + + R++ E + R  S +    Y+ GE
Sbjct: 619 LPLGVTEETTTTTTTTRNEEIERKRRKKKEEEDRKKSEEIYVPYNNGE 666


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 213 LRTGATEDRTPCRSTKRNEHFQPRTRRRAESDQRHFSSDQRSVYS*GE 356
           L  G TE+ T   +T RNE  + + R++ E + R  S +    Y+ GE
Sbjct: 841 LPLGVTEETTTTTTTTRNEEIERKRRKKKEEEDRKKSEEIYVPYNNGE 888


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 160 YQAGCSAPPXGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQG 291
           + AG   PP G       S P PPR G   +PP    +F  G+G
Sbjct: 751 FNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPP--PPSFRGGRG 792


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +1

Query: 130 STLASMTELVY-QAGCSAPPXGGHTNIFDSEPEPP---RT--GRRAVPPSATSTFSHGQG 291
           ST A+ TE    ++G       G  +    +PEPP   RT  G RA PP+ATST+    G
Sbjct: 98  STAATTTEAAEDESGYDFVNDNGPPSSRPRKPEPPTMPRTIQGFRAPPPAATSTYRPPHG 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,479,979
Number of Sequences: 27780
Number of extensions: 331251
Number of successful extensions: 957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)