Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F18
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03260.1 68414.m00304 expressed protein                             28   7.4  
At3g08670.1 68416.m01007 expressed protein                             28   9.8  

>At1g03260.1 68414.m00304 expressed protein
          Length = 274

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 677 VFPTLPFEMINVVLSASDARIG 742
           V P LPF M+N +LS +  R+G
Sbjct: 142 VVPILPFNMLNYLLSVTPVRLG 163


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 140 PQ*RSSSIKQGAPPPRXVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKRP 310
           P  RSSS  + + P R      SSTP+R   G  +    +A+ +LS+    T   RP
Sbjct: 196 PSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSR-PSTPTSRP 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,727
Number of Sequences: 28952
Number of extensions: 305294
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)