Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F17
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0302 - 2021221-2023305                                           32   0.73 
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    30   2.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   9.0  

>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +3

Query: 777 VXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWG--GXXPPXPTVP 911
           V  +P PG  GP P      GSP S      P  G  G  PP   VP
Sbjct: 563 VRFAPPPGSYGPIPSTPPSSGSPPSPSSGYQPPSGQPGASPPTQHVP 609


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +1

Query: 631 RPPEQASQKXTXXSKXANPXXXIKIXXXPPETXPVXPPFXDPAXLXXXXSXFPPXRXXGA 810
           +PP  A  K     + A P   +     PP   PV PP   PA        FPP      
Sbjct: 217 KPPAYAPAKPPTALRPAIPPAAMP---KPPSVAPVQPPQRPPAPATKPPPSFPPQLAPTM 273

Query: 811 PXP 819
           P P
Sbjct: 274 PPP 276


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
 Frame = +3

Query: 705 PXXSP*NXPXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGG 884
           P   P   P  PP   P P         P P K GP P      G    G     P  G 
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPK-GPSPPPPPPPGGKKGGPPPPPPKGGA 386

Query: 885 XXPP-XPTVP 911
             PP  P VP
Sbjct: 387 SRPPAAPGVP 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,983
Number of Sequences: 37544
Number of extensions: 215324
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)