Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F17
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    31   1.5  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    31   1.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.7  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = +3

Query: 723 NXPXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGGXXPPXP 902
           N P  PP     PL G        PG  G  P    + G P  G +   P  GG   P P
Sbjct: 149 NVPTGPP-----PLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 203


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = +3

Query: 723 NXPXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGGXXPPXP 902
           N P  PP     PL G        PG  G  P    + G P  G +   P  GG   P P
Sbjct: 429 NVPTGPP-----PLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 483


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = +3

Query: 729 PXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGGXXPPXPT 905
           P  PP   P P        SP P + G  P      GSP +G     P  GG  PP  T
Sbjct: 272 PPPPPTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTG-SLPPPQAGGSPPPAGT 326


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = +3

Query: 729 PXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGGXXPPXPT 905
           P  PP   P P        SP P + G  P      GSP +G     P  GG  PP  T
Sbjct: 293 PPPPPTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTG-SLPPPQAGGSPPPAGT 347


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = +3

Query: 729 PXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGGXXPPXPT 905
           P  PP   P P        SP P + G  P      GSP +G     P  GG  PP  T
Sbjct: 278 PPPPPTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTG-SLPPPQAGGSPPPAGT 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,747,339
Number of Sequences: 27780
Number of extensions: 153906
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)