Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F17
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    29   4.3  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    28   10.0 
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   10.0 

>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
 Frame = +1

Query: 628 PRPPEQASQKXTXXSKXANPXXXIKIXXXPPETXPVXPP-FXDPAXLXXXXSXFPPXRXX 804
           P PP+  S      +  A P   +     PP+T P  PP    P          PP    
Sbjct: 70  PPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAI 129

Query: 805 GAPXPKXXXXKVLPXR 852
             P P       LP +
Sbjct: 130 TPPPPLATTPPALPPK 145


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/68 (26%), Positives = 22/68 (32%)
 Frame = +3

Query: 702 NPXXSP*NXPXAPPFXXPCPLXGXXVXXSPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWG 881
           +P   P +   +P    P PL G     SP PG   P P        P  G         
Sbjct: 181 SPTPGPDSPLPSPGPDSPLPLPGPPPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSSSPTP 240

Query: 882 GXXPPXPT 905
           G   P P+
Sbjct: 241 GPDSPLPS 248


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 786 SPXPGKXGPXPKXXXLXGSPXSGXRSXXPXWGGXXPPXPTVP 911
           +P PG     P      GSP S   +  P  GG  P  PT P
Sbjct: 462 TPSPGSPPTSPTTPTPGGSPPSSPTTPTP--GGSPPSSPTTP 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,891
Number of Sequences: 28952
Number of extensions: 144995
Number of successful extensions: 225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)