Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F16
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   172   5e-44
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   172   5e-44
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   172   5e-44
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    70   5e-13
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   8.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   8.1  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  172 bits (419), Expect = 5e-44
 Identities = 83/85 (97%), Positives = 85/85 (100%)
 Frame = +1

Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
           LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRF 85



 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = +2

Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
           FQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QL
Sbjct: 85  FQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  172 bits (419), Expect = 5e-44
 Identities = 83/85 (97%), Positives = 85/85 (100%)
 Frame = +1

Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
           LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRF 85



 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = +2

Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
           FQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QL
Sbjct: 85  FQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  172 bits (419), Expect = 5e-44
 Identities = 83/85 (97%), Positives = 85/85 (100%)
 Frame = +1

Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
           MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
           LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRF 85



 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = +2

Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
           FQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QL
Sbjct: 85  FQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 32/43 (74%), Positives = 39/43 (90%)
 Frame = +2

Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
           +QS+A+  LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QL
Sbjct: 71  WQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQL 113



 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 34/58 (58%), Positives = 45/58 (77%), Gaps = 4/58 (6%)
 Frame = +1

Query: 229 ARKSAPATGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF 390
           A+KS  A  G  + +P   RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2   AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEF 59


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 259 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIA 381
           + + HR +    +L E + +++ S  LLI   P Q  +RE+A
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELA 548


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 295 ALREIRRYQKSTELLIRKLPFQR 363
           A RE+++ ++  EL++  LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,848
Number of Sequences: 5004
Number of extensions: 48194
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)