Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F16
         (875 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     174   3e-45
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       169   1e-43

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  174 bits (424), Expect = 3e-45
 Identities = 95/131 (72%), Positives = 101/131 (77%)
 Frame = +1

Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 334 LLIRKLPFQRLVREIAQDFKTDLRFSEFGGDGPAGSQRGVSGRSLRGHEPLRYSRETCDN 513
           LLIRKLPFQRLVREIAQDFKTDLRF         G+ +  S   L G   L      C  
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQ----SAAIGALQEASEAYLVG---LFEDTNLCAI 113

Query: 514 NAKRHTARPQN 546
           +AKR T  P++
Sbjct: 114 HAKRVTIMPKD 124



 Score = 84.6 bits (200), Expect = 4e-18
 Identities = 40/43 (93%), Positives = 42/43 (97%)
 Frame = +2

Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
           FQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85  FQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  169 bits (411), Expect = 1e-43
 Identities = 82/83 (98%), Positives = 82/83 (98%)
 Frame = +1

Query: 160 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 339
           RTKQTARKSTGGKAPRKQLA KAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 60

Query: 340 IRKLPFQRLVREIAQDFKTDLRF 408
           IRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61  IRKLPFQRLVREIAQDFKTDLRF 83



 Score = 69.7 bits (163), Expect = 1e-13
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +2

Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 505
           FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 83  FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 115


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,393
Number of Sequences: 2352
Number of extensions: 12281
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)