Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F16
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 172 2e-43
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 172 2e-43
At5g10400.1 68418.m01206 histone H3 identical to several histone... 172 2e-43
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 172 2e-43
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 172 2e-43
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 172 2e-43
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 172 2e-43
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 172 2e-43
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 163 1e-40
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 163 1e-40
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 161 6e-40
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 149 2e-36
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 111 6e-25
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 64 1e-10
At3g24620.1 68416.m03092 expressed protein contains Pfam profile... 32 0.58
At4g13240.1 68417.m02059 hypothetical protein contains Pfam prof... 31 1.3
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 30 1.8
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 30 1.8
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 30 1.8
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 29 4.1
At2g31070.1 68415.m03791 TCP family transcription factor, putati... 28 7.1
At5g38530.1 68418.m04659 tryptophan synthase-related low similar... 28 9.4
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 28 9.4
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 9.4
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 28 9.4
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 172 bits (419), Expect = 2e-43
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRF 85
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 163 bits (396), Expect = 1e-40
Identities = 78/85 (91%), Positives = 83/85 (97%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTAR STGGKAPRKQLA KAAR+SAPATGGVKKPHR+RPGTVALR+IR+YQKSTE
Sbjct: 1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
+LIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 ILIRKLPFQRLVREIAQDFKTDLRF 85
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK+IQL
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQL 127
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 163 bits (396), Expect = 1e-40
Identities = 79/85 (92%), Positives = 81/85 (95%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQTARKS GGKAPR LATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LLIRKLPFQRLVREIAQD+KTDLRF
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRF 85
Score = 84.6 bits (200), Expect = 8e-17
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QL
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQL 127
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 161 bits (391), Expect = 6e-40
Identities = 78/85 (91%), Positives = 81/85 (95%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MARTKQ+ARKS GGKAP KQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
LL RKLPFQRLVREIAQDFKTDLRF
Sbjct: 61 LLNRKLPFQRLVREIAQDFKTDLRF 85
Score = 84.6 bits (200), Expect = 8e-17
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QL
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQL 127
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 149 bits (362), Expect = 2e-36
Identities = 73/86 (84%), Positives = 79/86 (91%), Gaps = 1/86 (1%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKST 330
MARTKQTARKSTGGK PRK+LATKAARK+ P GGVK+ HR+RPGTVALREIR+YQKST
Sbjct: 1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKST 60
Query: 331 ELLIRKLPFQRLVREIAQDFKTDLRF 408
+LLIRKLPFQRLVREIAQDFK DLRF
Sbjct: 61 DLLIRKLPFQRLVREIAQDFKVDLRF 86
Score = 81.8 bits (193), Expect = 5e-16
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIM KDIQL
Sbjct: 86 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQL 128
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 111 bits (267), Expect = 6e-25
Identities = 56/85 (65%), Positives = 68/85 (80%)
Frame = +1
Query: 154 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 333
MAR+ QTARK+TGGKAP A + + S P +KKP+RY+PGTVALREIR+YQK+T+
Sbjct: 1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTD 55
Query: 334 LLIRKLPFQRLVREIAQDFKTDLRF 408
L+IRKLPFQRLV+EIAQ K DLRF
Sbjct: 56 LVIRKLPFQRLVKEIAQSLKADLRF 80
Score = 76.2 bits (179), Expect = 3e-14
Identities = 34/43 (79%), Positives = 40/43 (93%)
Frame = +2
Query: 407 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 535
FQ+ AV ALQEA+EA++VG+FEDTNLCA+HAKR TIMPKDIQL
Sbjct: 80 FQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQL 122
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +2
Query: 344 ANCLSSVSSVR*LKTSRPISXFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 523
A+ + V S+ + I+ + + A++ALQEA+E YLVGLF D+ LCAIHA+RVT+M K
Sbjct: 104 ASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRK 163
Query: 524 DIQL 535
D +L
Sbjct: 164 DFEL 167
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/72 (45%), Positives = 43/72 (59%)
Frame = +1
Query: 163 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 342
T+QT ++ R+ K +R++ P G KK +RYRPGTVAL+EIR +QK T LLI
Sbjct: 45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLI 101
Query: 343 RKLPFQRLVREI 378
F R VR I
Sbjct: 102 PAASFIREVRSI 113
>At3g24620.1 68416.m03092 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315); expression
supported by MPSS
Length = 523
Score = 31.9 bits (69), Expect = 0.58
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 506 HVSRE*RKGSCPRRDRPDTPRWLPAGPSPPN--SEXRRSVLKS*AISRTRRWKGSLRIKS 333
+VSR+ +G R DR + WLP PP SE R +L S T+ K ++ I +
Sbjct: 214 YVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINA 273
Query: 332 SVL 324
VL
Sbjct: 274 QVL 276
>At4g13240.1 68417.m02059 hypothetical protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 517
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 506 HVSRE*RKGSCPRRDRPDTPRWLPAGPSPPN--SEXRRSVLKS*AISRTRRWKGSLRIKS 333
+VSR+ +G R +R WLP PPN SE R +L S ++ K ++ I +
Sbjct: 203 YVSRDSEEGKQARNERTKDKWWLPPVKVPPNGLSESARRMLHFQKDSVSQVQKAAMAINA 262
Query: 332 SVL 324
VL
Sbjct: 263 QVL 265
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 376 IAQDFKTDLRFSEFGGDGPAGSQRGVSGRSLRGHEPLRYSRETCDNNAK 522
I D T L+ S FGG+ +G V S+ G P + +CD+ A+
Sbjct: 182 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 376 IAQDFKTDLRFSEFGGDGPAGSQRGVSGRSLRGHEPLRYSRETCDNNAK 522
I D T L+ S FGG+ +G V S+ G P + +CD+ A+
Sbjct: 120 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 168
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 376 IAQDFKTDLRFSEFGGDGPAGSQRGVSGRSLRGHEPLRYSRETCDNNAK 522
I D T L+ S FGG+ +G V S+ G P + +CD+ A+
Sbjct: 182 ILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 460 RSLRGHEPLRYSRETCDNNAKRHTARPQN 546
R G E LR S T DNN + H A+ Q+
Sbjct: 267 REFEGLEQLRASDSTADNNEEEHAAKGQS 295
>At2g31070.1 68415.m03791 TCP family transcription factor, putative
similar to TCP1 protein (GI:20269127) {Lupinus albus}
and cycloidea (GI:12002867) [Lycopersicon esculentum]
Length = 361
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 598 NQSINWSSTNNLRTFTSDSAGELYVFWHYCHTFRVNSAKVRVLEETDQIRLAGFLQGHH 422
N ++ TNN T D+ G + + H+ T +S+ +E ++ GF+ HH
Sbjct: 191 NNTVVVPETNNFTTTHFDTFGRISGWNHHDLTMTSSSSSEHQQQEQEERSNGGFMVNHH 249
>At5g38530.1 68418.m04659 tryptophan synthase-related low similarity
to tryptophan synthases, beta subunit, from Lactococcus
lactis [SP|Q01998], Pyrococcus kodakaraensis
[SP|Q9YGB0], Thermus thermophilus [SP|P16609]; contains
Pfam pyridoxal-phosphate dependent enzyme domain PF00291
Length = 506
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 140 ELVSKWRVPNRLLVSRPEVKLLASNWRPRPLVRAHRQQEV 259
EL+ + R + EV + WRP PL+RA R +++
Sbjct: 106 ELIKQEATQERFIDIPEEVLEIYKLWRPTPLIRAKRLEKL 145
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.9 bits (59), Expect = 9.4
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 125 VRLRRELVSKWRVPNRLLVSRPEVKLLASNWRPRPLVRAHRQQEVSRSLIVTG---PGRS 295
+RL R +S+ V R +SR V + RPR R++ +SRS G GR
Sbjct: 624 IRLSRRSISRSPVRGRRRISRSPVPARRRSVRPRS-PPPDRRRSLSRSASPNGRIRRGRG 682
Query: 296 PFVRFVVTRRARNS 337
RF RR R S
Sbjct: 683 FSQRFSYARRYRTS 696
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 173 LLVSRPEVKLLASNWRPRPLVRAHRQQ 253
LL+ RPE+ LLA+N P P + R++
Sbjct: 451 LLLDRPELLLLATNGSPEPTTMSPRRR 477
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 469 RGHEPLRYSRETCDNNAKRHTARPQN 546
+G E LR S T DNN + H A+ Q+
Sbjct: 274 KGLEQLRASDSTADNNEEEHAAKGQS 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,402,649
Number of Sequences: 28952
Number of extensions: 265977
Number of successful extensions: 801
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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