Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F15
         (995 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 697 GPPPGXGXPPXGGPXXXF 750
           G PP  G PP G P   F
Sbjct: 66  GGPPSGGQPPQGMPYPRF 83



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 696 GPPPGXGXPPXGXP 737
           G PP  G PP G P
Sbjct: 66  GGPPSGGQPPQGMP 79



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -3

Query: 993 PAGRXRDXXPPPPXGGXRXGGXP--GXPXP 910
           P+   R   PP   GG   GG P  G P P
Sbjct: 52  PSVGLRQGIPPHHYGGPPSGGQPPQGMPYP 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,575
Number of Sequences: 336
Number of extensions: 1927
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28340642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)