Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F15
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.083
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.25 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.77 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   8.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   8.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.083
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
 Frame = +1

Query: 643 SPXPPXGG---PPPXXXFWXXGPP-PGXGXPPXGGPXXXFXXGXPPPPPPXXP 789
           SP PP      P P        PP P  G PP   P        PPPPPP  P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 637 VXSPXP-PXGGPPPXXXFWXXGPPPGXGXPPXGGPXXXFXXGXPPPPPPXXPP 792
           V +P P P   PPP        PPP    PP G        G  PPPPP  PP
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPP----PPPG------VAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +2

Query: 704 PRXGXPPXGXAPXGXFXXGXPPP-PPRXA 787
           P  G PP    P G    G PPP PP  A
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 700 PPPGXGXPPXGGPXXXFXXGXPPPPPPXXPP 792
           PPP    P    P         PPPPP  PP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 763 PPPPPPXXPP 792
           PPPPPP  PP
Sbjct: 239 PPPPPPTLPP 248


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = +1

Query: 646  PXPPXGGPPPXXXFWXXGPP---PGXGXPPXGGPXXXFXXGXPPPPPPXXPP 792
            P P   G PP        PP   P  G PP   P      G PP PPP   P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP----AAGVPPVPPPSEAP 1198



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +1

Query: 646  PXPPXGGPP-PXXXFWXXGPPPGXGXPPXGGPXXXFXXGXPPPPPPXXPP 792
            P P  G PP P         PP    PP   P      G PP PPP   P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSV----GVPPVPPPSTAP 1217


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +1

Query: 646  PXPPXGGPPPXXXFWXXGPPPGXGXPPXGGPXXXFXXGXPPPPPPXXP 789
            P  P    PP        PPP    PP   P      G P  PPP  P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP--PMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 703 PPGXGXPPXGGPXXXFXXGXPPPPPP 780
           PPG   PP   P        PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = -1

Query: 788 GXXGGGGGGXPXXXXXXGPPXGGXPXPGGGPXXQXKXXGGGPPXGGXG 645
           G  GGG GG        G   GG     GG        GGGP  GG G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP--GGHG 269


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 766 PPPPPXXPP 792
           PPPPP  PP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 8.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 763 PPPPPP 780
           PPPPPP
Sbjct: 907 PPPPPP 912


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect(2) = 8.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 763 PPPPPPXXPP 792
           PPPPPP   P
Sbjct: 356 PPPPPPMPAP 365



 Score = 21.4 bits (43), Expect(2) = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 757 GXPPPPPPXXP 789
           G  PPPPP  P
Sbjct: 353 GSRPPPPPPMP 363


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 700 PPPGXGXPPXGGPXXXFXXGXPPPPPPXXPP 792
           PPP         P        PPPPPP   P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +1

Query: 646 PXPPXGGPPPXXXFWXXGPPPGXGXPPXGGPXXXFXXGXPPPPPPXXP 789
           P PP G   P        P  G   PP            PP PPP  P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSR---AVSNPPAPPPAIP 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,448
Number of Sequences: 5004
Number of extensions: 17776
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)