Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F13
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 121 1e-28
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.27
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 1.9
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 27 3.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 4.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.8
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 7.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.7
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 121 bits (292), Expect = 1e-28
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%)
Frame = +1
Query: 157 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 336
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 337 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 513
+ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R
Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142
Query: 514 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSY 687
L R + IG P+F +A Q+++ IL ++ ++YNKF S VS+
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSF 200
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 710 YTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKXGPC 841
YT K+I + L+AY+ D +V Q EF+ A+ +F A+ C
Sbjct: 208 YTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHC 250
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.7 bits (66), Expect = 0.27
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 355 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 519
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 520 LQRLYGKHIISVA 558
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 712 VEGASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 608
V GAS+T P + +C F N+ L+ EW W
Sbjct: 43 VGGASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 638 LVPERSF--ITSSSLWYRTPSPTCPFYTKKSIESASK 742
L P RSF +TS+ W + P + K++ ASK
Sbjct: 128 LKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASK 164
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -1
Query: 606 QLTCVQESRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 433
+L + ES+++T+ +T + + D R+I D D + +ET+A F+Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.8
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +2
Query: 620 SPQDTSLVPERSFITSSSLWYRTPSPTCPFYTKKSIESASKLTAYDSLDSDVLQSYTEFS 799
S +SL S +SS+ + SPT T S S+S ++ + S S T S
Sbjct: 79 SAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSS 138
Query: 800 LAS 808
LAS
Sbjct: 139 LAS 141
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +2
Query: 593 TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPFYTKKSIESASKLTAYDSLDSD 772
TQ +PL FSP+ +S+ S + S + P P ++ I+ A DS +
Sbjct: 1403 TQTDFPLVFSPERSSIDINASSMRSEKASFEIPFP------EEQIDDDVSPVAQDSSLEE 1456
Query: 773 VLQSYTEFSLASLL 814
+L S L S++
Sbjct: 1457 LLISLDIIDLTSVM 1470
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 388 AMTSDRGLCGAVHTGVSKVIRNRLSE 465
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,105
Number of Sequences: 5004
Number of extensions: 79137
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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