Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F13
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 66 4e-11
07_03_0571 - 19602755-19603831 62 5e-10
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 34 0.16
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 30 2.0
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 29 4.6
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 4.6
05_05_0161 + 22833507-22834694 28 8.1
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 65.7 bits (153), Expect = 4e-11
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 190 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 369
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 370 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 540
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 541 HIISVANEIGRLP 579
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
>07_03_0571 - 19602755-19603831
Length = 358
Score = 62.1 bits (144), Expect = 5e-10
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Frame = +1
Query: 184 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 360
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 361 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 504
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 505 KSRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFK 672
K R + I E+ + PT D+ + + + K+ +Y+KF
Sbjct: 157 KGNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212
Query: 673 SVV 681
S+V
Sbjct: 213 SLV 215
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 587 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPS---PTCPFYTKKSIESASKLTAYD 757
SW++ W +P S Q S+ P+ S I ++ LW R PS P F K + L +D
Sbjct: 306 SWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNPPNDFDEHKEDGQENSLRPWD 363
Query: 758 SLDSDVLQ 781
L ++L+
Sbjct: 364 HLPVELLE 371
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = -1
Query: 576 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVR 397
E + SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 396 GHSNKQLLGVIFGRCNLSP 340
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -1
Query: 492 DHLDVLSTRFAETVADHF---------RYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 352
D+L ++S A V D F ++ SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 351 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 241
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 467 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 342
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>05_05_0161 + 22833507-22834694
Length = 395
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 769 AVQRVVCRQLAGALNRLLSVEGAS 698
+V RVVC L G L RL ++GAS
Sbjct: 124 SVARVVCNPLTGQLLRLPDIDGAS 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,568,447
Number of Sequences: 37544
Number of extensions: 571114
Number of successful extensions: 1543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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