Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F13
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             179   3e-45
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)              33   0.38 
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   6.2  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   8.2  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  179 bits (435), Expect = 3e-45
 Identities = 78/167 (46%), Positives = 122/167 (73%)
 Frame = +1

Query: 196 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 375
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 376 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISV 555
            L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GDK++ IL R  GK+++  
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181

Query: 556 ANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQS 696
             ++G+ PP F +A+ LA  IL +G++F +G + YN F+SVVS+  S
Sbjct: 182 FMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRAS 228



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 28/37 (75%)
 Frame = +2

Query: 731 SASKLTAYDSLDSDVLQSYTEFSLASLLFYALKXGPC 841
           ++  +++YD LDS+V++ Y EF+LAS+LF+ +K   C
Sbjct: 242 ASDSMSSYDELDSEVIRCYQEFNLASMLFFGMKEQSC 278


>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
          Length = 571

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
 Frame = +1

Query: 370 PKQLFVAMTSDRG-LCGAVHTGVSKV------IRNRLSEPGAENIKVICVGDKSRGILQR 528
           P++LF+   S  G +  AV+TG+S+V      +R    +     IK   + D+ +G  + 
Sbjct: 447 PRRLFIIDHSLEGWITNAVYTGISRVRLAGQIVRVIPPDDTPARIKRYAIDDRQKGRTKY 506

Query: 529 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 633
               H+++V N +G +       +   T +L  GY
Sbjct: 507 TGPHHVLTVDNVLGMIADAEKKYTLCGTQLLLQGY 541


>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +1

Query: 370  PKQLFVAMTSDRG-LCGAVHTGVSKVIRNRLSEPGAEN-----IKVICVGDKSRGILQRL 531
            P++LF+   +  G +  AV+TG+ +V   RL    +E      IK   + D+ +G  +  
Sbjct: 842  PRRLFIIDHNLEGWIANAVYTGIFRV---RLQATPSEELIIARIKRYAIDDRQKGRTKYT 898

Query: 532  YGKHIISVANEIGRLPPTFLDASQLATAILTSGY 633
               H+++V + +G +  T    +     +L  GY
Sbjct: 899  GSHHVLTVDHVLGMIAETEKKCTVCGAQLLLQGY 932


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
 Frame = +1

Query: 370  PKQLFVAMTSDRG-LCGAVHTGVSKVIRN----RLSEPGAEN-----IKVICVGDKSRGI 519
            P++LF+   S  G +  AV+TG+S+V       R++ P   +     IK   + D+ +G 
Sbjct: 754  PRRLFIIDHSLEGWITNAVYTGISRVRHTDQIVRVTPPPPPDNTPARIKRYAIDDRQKGR 813

Query: 520  LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 633
             +     H+++V + +G +       +   T  L  GY
Sbjct: 814  TKYTGSHHLLTVYHVLGMIADAEKKCTVCGTQRLLQGY 851


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 258 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 163
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 564 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVRGHSN 385
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 384 KQ 379
            Q
Sbjct: 121 SQ 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,760,681
Number of Sequences: 59808
Number of extensions: 639500
Number of successful extensions: 1763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)