Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F12
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 31 0.30
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 29 0.68
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.8
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 27 3.6
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 3.6
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 3.6
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 4.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.4
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 258 QDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPPGATPA 380
Q +NN N +Q+ N +N N++SK+R PP + P+
Sbjct: 178 QPLASSNNKNHNQSKNPQNRSNSRSKQRN--KNAPPKSAPS 216
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.68
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 249 TRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPPGATPAGVFPSP 398
T + + A+ NDS K+ + K KERK L T A + SP
Sbjct: 36 TTITENFTASQNNDSAKREKRKKQRQKQKERKRAKLLELQDTNASIIQSP 85
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 180 YEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRL 359
Y + R E S + + K +L ++ A+ D++ KN E KSK + V+
Sbjct: 1107 YYSVKERFRNETESYDRVFSSK-PQLDAQIAADRELDAKQKLAKNQEPVKSKRKSVIRAK 1165
Query: 360 PP 365
PP
Sbjct: 1166 PP 1167
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +3
Query: 243 KLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPPGATPAGVFPSPPPRGVLV 419
K L + + ++ S + + + +++K+L + PP PA + P+P P + V
Sbjct: 693 KTEDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPV 751
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 213 ARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLS 353
ARSPED+I + T+ L N L S KK E + E + L+
Sbjct: 163 ARSPEDMILLRETQPLAPLDINTLGVSDNRQKKGTEKKRPFEPEFLN 209
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 369 ATPAGVFPSPPPRGVLVIRTPRGPDGTKGFLKR 467
+TPA P P P+ + R P+GP TK LKR
Sbjct: 19 STPATGPPPPIPKIKIKTREPKGPRLTKIRLKR 51
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/58 (18%), Positives = 32/58 (55%)
Frame = +1
Query: 235 LMINSPGYKTNYKQIILMTVKQIIRKMVKTLKVKNVKCYLGFHLELPQLEYFHLHLHE 408
+++ + K+ Y Q++L ++K + +++ +TL +++C+ F + ++HE
Sbjct: 576 MLLQTFSIKSEY-QVVLKSIKYLFKRVSETLSTASLECFRIFVYRSALFAFNKSNVHE 632
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 150 VKTLEQRQKEY-EQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENA 326
++ EQRQK+ + + RSP D+ +L K ++ D T+N N
Sbjct: 118 MQAYEQRQKQLMDDVEAKAAAVKRSPAAAFDEMRNKLVGKTNYKSIFDKSTSNSTVTSNQ 177
Query: 327 KSK 335
+K
Sbjct: 178 FNK 180
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 330 SKERKVLSRLPPGATPAGVFPSPPPRGVLVIRTPRGP 440
SK + S LPP A PA SPP L P P
Sbjct: 162 SKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,696
Number of Sequences: 5004
Number of extensions: 67492
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -