Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F12
(903 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_31348| Best HMM Match : ERM (HMM E-Value=0) 33 0.32
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 32 0.55
SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6) 31 1.7
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 31 1.7
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 30 2.2
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 30 2.2
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045) 29 3.9
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 29 5.1
SB_56912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_41255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_6364| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 28 9.0
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 28 9.0
SB_5158| Best HMM Match : PH (HMM E-Value=0.28) 28 9.0
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 28 9.0
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 34.3 bits (75), Expect = 0.14
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 156 TLEQRQKEYEQARLR--ILGEARSPEDII--DDKLTRLQDKLQANNLNDSQTNNKKNGEN 323
T+ + +Y+ +RLR I+ R+P ++ D Q L + S TN + N +N
Sbjct: 5244 TISEIISKYDTSRLRYAIVTFGRNPATVLYFGDTFQSKQKFLDYIKILPSPTNGEPNLKN 5303
Query: 324 AKSKERKVLSRLPP 365
A S+ RKV R PP
Sbjct: 5304 ALSEVRKVFERAPP 5317
>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
Length = 665
Score = 33.1 bits (72), Expect = 0.32
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 156 TLEQRQK---EYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENA 326
TL QR+ E E RLR+ E I ++ R D+L +S+ ++N NA
Sbjct: 209 TLLQRKATDAEEELRRLRLSASKSEEEKSILERRAREADELFRRVFQESEARGRENLLNA 268
Query: 327 KSKERKVLSRLPPGATPAGVFPS 395
K E+K + +L ++ + PS
Sbjct: 269 KHTEKKAVQKLAELSSSSNNLPS 291
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 32.3 bits (70), Expect = 0.55
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 123 LNGENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQAN-NLNDSQT 299
L+ +N+ + V LE K ++ + I ++ D D +L LQ + N L +S
Sbjct: 517 LDQKNKEKEVVILEMN-KRIQEKKETITNMEKNISDK-DKQLRSLQSRFVDNCRLGESSK 574
Query: 300 NNKKNGENAKSKERKVLSRLPPGATPAGVFPSPP 401
+++K+ E K ++++++ +PA PS P
Sbjct: 575 DHQKSEETVKKQKKEIMELENRSGSPASFGPSSP 608
>SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6)
Length = 381
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 225 EDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERK 344
ED++ + L L D +Q + S KNG +++K R+
Sbjct: 203 EDVVPESLIELNDSVQEQHTAQSSPEPDKNGRRSRAKSRE 242
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 141 ARPVKTLEQRQKEYEQARLRILGEARSPE-DIIDDKLTRLQDKLQANNLNDSQTNNKKNG 317
A+ + LE +QK+ EQ RL E E + ++ K +D+L+ + + K+
Sbjct: 338 AKEKERLEAKQKK-EQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEE 396
Query: 318 ENAKSKERK 344
NAK +E+K
Sbjct: 397 INAKIEEKK 405
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 360 PPGATPAGVFPSPP-PRGVLVIRTPRGPDGTKG 455
PP PA P PP P G + + P+GPDG KG
Sbjct: 1663 PPPPPPA---PGPPGPDGPMGLPGPQGPDGPKG 1692
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 360 PPGATPAGVFPSPPPRGVLVIRTPRGPDGTKG 455
P G +P G P PRG+ R P+GP G +G
Sbjct: 76 PRGRSPPGPPGIPGPRGLPGYRGPKGPPGYQG 107
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 29.9 bits (64), Expect = 2.9
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +3
Query: 15 TTHYRESLRFESTWRPRMKLTYVKVGKIWMKLLVGQLNGENRARPV-KTLEQRQKEYEQA 191
TT E + E+ + + KL + K +K Q E +A+ K ++R+KE E+
Sbjct: 275 TTEEEEKQKEEAERKKQEKLEKLAKKKEELKERKRQEKLEQKAKKKEKERQEREKEKERE 334
Query: 192 RLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSR 356
+ RI E ++ + + + Q+K + + + K E K ERK L R
Sbjct: 335 KERIQQEKEKQKERREKEKQKHQEKKEKERQREKE---KLEKEKQKELERKELQR 386
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = +3
Query: 120 QLNGENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQT 299
+L G A+P E+ +A L + + I K R + +L + Q
Sbjct: 336 RLKGTEAAKPSTKWRALVGEHRKAGLLSSQKPNASMTITKSKNKRYTWRGWQVSLTEGQE 395
Query: 300 -NNKKNGENAKSKERKVLSRLPPGATPAGVFPSPPP 404
NNKK N S+ER+ +L PA + PP
Sbjct: 396 PNNKKKSSNGSSRERRESVKLNEHGHPATIAALLPP 431
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 150 VKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAK 329
+++ Q Q+++EQ+R R + PE + + R + N + Q +K N E +
Sbjct: 268 IQSQVQYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGSRDQYTDKSNSETVR 327
Query: 330 SKE 338
KE
Sbjct: 328 EKE 330
>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
Length = 514
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = -3
Query: 493 IITVLKYCYLFRK--PLVPSGPRGVRITSTPRGGGDGNTPAGV-----APGGSRDNT 344
+IT K C F + P P G T+TPRG TP GV PGG+ T
Sbjct: 247 VITGYKVCNNFTRGVPTQQLYPGGTHATTTPRGTHATTTPRGVPTQQLLPGGTHATT 303
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +3
Query: 138 RARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQ 296
R R ++ + +++ Q+R R SP+ +++ ++TRL+ ++ N +Q
Sbjct: 1440 RLRELRGDKNTEQQSTQSRARTKATVHSPKQLLERQITRLESRIDTMNAELTQ 1492
>SB_56912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 225 EDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSR 356
E I D+ L + + + + N DS+ N +NG N S+E+ L R
Sbjct: 296 EIIGDEDLGKTRSETENKN-EDSEANGDENGHNEASEEKPALKR 338
>SB_41255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 297 TNNKKNGENAKSKERKVLSRLPPGATPAGVFPSPP-PRG 410
T N +N + +KSK + +S+ P P G P PP P+G
Sbjct: 23 TANTRNNKKSKSKNKATVSQGPAAVGPPGP-PGPPGPQG 60
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 360 PPGATPAGVFPSPPPRGVLVIRTPRGPDG 446
PPG P P PP R + + PR P G
Sbjct: 318 PPGMGPPPRIPPPPIRAPVDVYPPRAPQG 346
>SB_6364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 192 RLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPP 365
R +LG + + +ID+ + ++ K A N N + N +SK R+ L PP
Sbjct: 298 RREVLGTNQILDKLIDEIIALVESKEMAQNPYHRPPNPSSHHYNNRSKSRQQLQYQPP 355
>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 411 VLVIRTPRGPDGTKGF 458
V+VIR P PDGT+GF
Sbjct: 772 VMVIRKPIAPDGTRGF 787
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 9.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 360 PPGATPAGVFPSPPPRG 410
PP + P G+ P PPP G
Sbjct: 388 PPWSKPGGILPGPPPPG 404
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 228 DIIDDKLTRLQDKLQA-NNLNDSQTNNKKNGENAKSKERKVLSRLPPG 368
++ +D R+QD+ + NN N+S +N+ N N + R L G
Sbjct: 1239 ELFEDDKQRIQDEDDSSNNNNNSNSNSSNNNNNNNNNNRASYETLATG 1286
>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 327 KSKERKVLSRLPPGATPAGVFPSPPPRG 410
+ K+ + LS+ P G P+G+ PS PRG
Sbjct: 609 RGKKVRELSQDPQGVKPSGIDPSVRPRG 636
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 28.3 bits (60), Expect = 9.0
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +3
Query: 201 ILGEARSPEDIIDDKLTRLQDKLQANNLND--SQTNNKKNGENAKSKERKVLSRLPPGAT 374
IL SP +D+ T Q + L S NN K A ++ + LS+
Sbjct: 147 ILENTTSPTRYLDEPTTLPQVDYTSQQLRLLWSADNNTKTQLLALEQQVQRLSQASGSTG 206
Query: 375 PAGVFPSPPPRGVLVIRTPRGPDGTKG 455
P G S P G + +GP GTKG
Sbjct: 207 PRGYNGSRGPPGPSGPQGQQGPPGTKG 233
>SB_5158| Best HMM Match : PH (HMM E-Value=0.28)
Length = 502
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 117 GQLNGENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQ 296
G ++R RPV T+E+R R + +S ED + K+ +DK + + +D Q
Sbjct: 226 GNSGHQSRMRPVSTIEER-----NTTTRDIRSVKSSED-LPSKVKSTKDK-EKSEKHDKQ 278
Query: 297 TNNKKNGENAKS 332
++K + KS
Sbjct: 279 DKHEKRDKQNKS 290
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 234 IDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPPGATPA 380
I L +++ Q NN N++ NN N N + E + + R TP+
Sbjct: 352 IAQALMQVRADYQNNNNNNNNNNNNNNNNNNNNNETEEVDREAATRTPS 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,825,542
Number of Sequences: 59808
Number of extensions: 504548
Number of successful extensions: 1843
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1820
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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