Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F12
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   5.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   5.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   5.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   5.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 270 QANNLNDSQTNNKKNGENAKSKE 338
           Q NN ND+   +K NG N+ + +
Sbjct: 134 QENNYNDNYFYSKSNGSNSSNSD 156


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 291 SQTNNKKNGENAKSKERKVLSRL 359
           S+  ++   E  +SKERK++S L
Sbjct: 63  SKERSRDKRERERSKERKIISSL 85


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 291 SQTNNKKNGENAKSKERKVLSRL 359
           S+  ++   E  +SKERK++S L
Sbjct: 63  SKERSRDKRERERSKERKIISSL 85


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 291 SQTNNKKNGENAKSKERKVLSRL 359
           S+  ++   E  +SKERK++S L
Sbjct: 296 SKERSRDRTERERSKERKIISSL 318


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 291 SQTNNKKNGENAKSKERKVLSRL 359
           S+  ++   E  +SKERK++S L
Sbjct: 301 SKERSRDKTERERSKERKIISSL 323


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 276 NNLNDSQTNNKKNGEN 323
           NN N++  NN  NG N
Sbjct: 240 NNNNNNNNNNNNNGAN 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,867
Number of Sequences: 438
Number of extensions: 4761
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)