Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F12
(903 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 30 1.8
At4g32020.1 68417.m04558 expressed protein NuLL 30 1.8
At5g60030.1 68418.m07527 expressed protein 29 4.2
At4g15650.1 68417.m02385 protein kinase-related contains weak si... 29 4.2
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 29 4.2
At4g21630.1 68417.m03135 subtilase family protein contains simil... 29 5.6
At3g56680.1 68416.m06305 expressed protein 28 7.4
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ... 28 7.4
At4g20840.1 68417.m03024 FAD-binding domain-containing protein s... 28 9.7
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 28 9.7
At4g00760.1 68417.m00106 two-component responsive regulator fami... 28 9.7
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH... 28 9.7
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 303 NKKNGENAKSKERKVLSRLPPGATPAGVFPSPPPRGVLVIRTPR 434
N+ ENAK E K P +P P PPP+ ++ PR
Sbjct: 276 NRDLQENAKRSETKFKRTFQPPPSPPPPPPPPPPQPLIAATPPR 319
>At4g32020.1 68417.m04558 expressed protein NuLL
Length = 181
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 219 SPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPPGATPAGVFPSP 398
+P+D + D + ++ + + Q N +S R SR ++P P P
Sbjct: 7 NPQDCLKDPFSHMKQHRNPSACPNRQKKTVSNNRTRRSPPRSQSSR---SSSPPVAPPLP 63
Query: 399 PPRGVLVIRTPRG 437
PPR + P+G
Sbjct: 64 PPRAAVSAFVPKG 76
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 159 LEQRQKEYE-QARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSK 335
LE QK + + R + + + ED++D+K +L+D+ ++ + + + N ++ + K K
Sbjct: 173 LEDEQKSADRKERKKKKSKKNNDEDVVDEK-EKLEDEQKSAEIKEKKKNKDEDVVDEKEK 231
Query: 336 ER 341
E+
Sbjct: 232 EK 233
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 162 EQRQKEYEQARLRILGEARSP-EDIIDDK-LTRLQDKLQANNLNDSQTNNKKNGENAKSK 335
E+ + E EQ I + ++ ED++D+K +L+D+ ++ + +K+ E S+
Sbjct: 201 EKEKLEDEQKSAEIKEKKKNKDEDVVDEKEKEKLEDEQRSGERKKEKKKKRKSDEEIVSE 260
Query: 336 ERK 344
ERK
Sbjct: 261 ERK 263
>At4g15650.1 68417.m02385 protein kinase-related contains weak
similarity to protein kinase [Dictyostelium discoideum]
gi|551446|emb|CAA86053
Length = 258
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +3
Query: 204 LGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVLSRLPPGATP 377
+G +S D++ TR++ +A ++ + K E+ + +E +S + PG P
Sbjct: 1 MGCGKSKHDVVTGNTTRIKKPSEAESVKGKDSEAIKRQESCRCQETNDVSAVVPGDQP 58
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 363 PGATPAGVF-PSPPPRGVLVIRTPRGPD 443
PGA P G F P+PP + + R P GP+
Sbjct: 645 PGAGPLGPFVPAPPEVAMQMFRDPSGPN 672
>At4g21630.1 68417.m03135 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 772
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 312 NGENAKSKERKVLSRLPPGATPAGVFP--SPPPRGVLVIRTPRGPDGTKGF-LKR*QYLS 482
NG+ A +K + SR P +PA + P + P +L +P PD GF L +S
Sbjct: 498 NGQPAMTKVAEFSSRGPNSVSPAILKPDIAAPGVSILAAVSPLDPDAFNGFGLYSGTSMS 557
Query: 483 TVIIS 497
T ++S
Sbjct: 558 TPVVS 562
>At3g56680.1 68416.m06305 expressed protein
Length = 353
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +3
Query: 132 ENRARPVKTLEQRQKEYEQARLRILGEARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKK 311
E P++++E+R++EY++AR RI DD + Q + N + S+ ++K+
Sbjct: 151 EKNRGPLRSVEERKEEYDKARERIFSGLTGLS--CDDSSSETQ--VYERNASLSR-DDKQ 205
Query: 312 NGENAKSKERKVLSRLPPGAT 374
+NA + +K LS G T
Sbjct: 206 VSKNAYVEVKKNLSIRESGPT 226
>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
PF03005: Arabidopsis proteins of unknown function
Length = 451
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 360 PPGATPAGVFPSPPPRGVLVIRTPRGPDGTKG 455
PP + P PSPPP V +TP G D KG
Sbjct: 83 PPPSPPP---PSPPPPAFAVGKTPEGCDVFKG 111
>At4g20840.1 68417.m03024 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 539
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 217 GVLKILLMINSPGYKTNYKQIILMTVKQIIRKMVKTLKVKNVKCYLG 357
G + ++ S G KT+ + M ++ + RK VKT++ V +LG
Sbjct: 272 GAVDMVHKWQSVGPKTDRNLFLRMLIQPVTRKKVKTVRATVVALFLG 318
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 210 EARSPEDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKS 332
EA+S +D+I+DK Q + + D + N+ +NGE S
Sbjct: 739 EAKS-KDVIEDKNMNPQAVIHGSKERDKERNSSQNGEETLS 778
>At4g00760.1 68417.m00106 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 367
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 204 LGEARSP-----EDIIDDKLTRLQDKLQANNLNDSQTNNKKNGENAKSKERKVL 350
LG+ + P +D+ ++ L + + +ANN + T KKNGE+++ K +++
Sbjct: 207 LGDQKKPKLLFADDLQNETLEAVPNIEEANNERKAPTEIKKNGESSEKKSPELV 260
>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
(CHX13) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 831
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 599 AFQIAVTYSDGPCLATELAINTDCYIVKIYSTALSCIILI 718
AF + V+ DGP L TELA + + ++ L C I I
Sbjct: 310 AFWLGVSLPDGPPLGTELAAKLEMFASNLF---LPCFIAI 346
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,452
Number of Sequences: 28952
Number of extensions: 349968
Number of successful extensions: 1252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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