Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F11
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.72 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.96 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -2

Query: 503 IKXPPPPRXGGXXXGTPXGPPXPXP---PFXGGXPXPXPPP 390
           +K PPPP        TP   P P P   P  GG P P PPP
Sbjct: 729 LKSPPPPPPA-VIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 494 PPPPRXGGXXXGTPXGPPXPXPPFXGGXPXPXPPPXXP 381
           PP P  GG        PP P PP   G   P PPP  P
Sbjct: 753 PPAPIMGGP-------PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -2

Query: 494 PPPPRXGGXXXGTPXGPPXPXPPFXGGXPXPXPPPXXPXXP 372
           PPPP  G    G P  PP P     GG     P P     P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 503 IKXPPPPRXGGXXXGTPXGPPXPXPPFXGGXPXPXPPP 390
           I  PPP    G   G P  PP P     G  P P PPP
Sbjct: 749 IPVPPPAPIMG---GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 518 PPPPXGXXRXXGXPPPXPP 574
           PPPP       G PPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 518 PPPPXGXXRXXGXPPPXPP 574
           PPPP G       PPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = -2

Query: 446 PPXPXPPFXGGXPXPXPPPXXPXXPXFXXXFFXXXPPXXXFFXXXXGXPPP 294
           PP P P      P P P P  P  P          PP           PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 455 PXGPPXPXPPFXGGXPXPXPPPXXP 381
           P G P P PP  G  P   PPP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 518 PPPPXGXXRXXGXPPPXPP 574
           PPPP G       PPP PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 518 PPPPXGXXRXXGXPPPXPP 574
           PPPP         PPP PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 458  TPXGPPXPXPPFXGGXPXPXPPPXXPXXP 372
            TP  PP   PP     P P  PP  P  P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 493  PPPPAXGXXKXGPRXGPPXPXP 428
            PPPP+      GP   PP P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
 Frame = -2

Query: 533 PXGGGGXFFXIKXPPPPRXGGXXXGTPXGP-----PXPXPPFXGGXPXPXPPP 390
           P G G     +  PPPP         P  P     P P PP         PPP
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -2

Query: 626 GGXXGXXPXPGLXGXFXXXXXGGGSPXXXXXPXGGGG 516
           GG  G      + G F     GGG P       GGGG
Sbjct: 144 GGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.156    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,954
Number of Sequences: 5004
Number of extensions: 24192
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)