Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F11
         (948 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            28   0.36 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    28   0.36 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 476 GGXXXGTPXGPPXPXPPFXGGXPXPXPPPXXP 381
           G    G P GPP P PP  GG     PP   P
Sbjct: 520 GRDLTGGPLGPPPPPPP--GGAVLNIPPQFLP 549



 Score = 25.0 bits (52), Expect = 3.3
 Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
 Frame = -2

Query: 557 GSPXXXXXPXGGGGXFFXIKXP--PPPRXGGXXXGTPXGP-----PXPXPPFXGGXPXPX 399
           G P     P   GG    I     PPP         P  P     P   P      P P 
Sbjct: 525 GGPLGPPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPA 584

Query: 398 PPPXXPXXP 372
           PPP  P  P
Sbjct: 585 PPPPPPMGP 593


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -2

Query: 557 GSPXXXXXPXGGGGXFFXIKXPPPPRXGGXXXGTPXGPPXPXPPFXGGXPXPXPPPXXP 381
           G P     P   GG    I        GG   G   GPP P  P  GG P   P    P
Sbjct: 261 GQPPPIRPPNPMGGPRPQISPQNSNLSGGMPSGM-VGPPRPPMPMQGGAPGGPPQGMRP 318



 Score = 27.5 bits (58), Expect = 0.63
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -2

Query: 491 PPPRXGGXXXGTPXGPPXPXPPFXGGXPXPXPPPXXPXXP 372
           PP   G    GTP  P  P P      P   P P  P  P
Sbjct: 194 PPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMP 233


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.310    0.156    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 439,877
Number of Sequences: 2352
Number of extensions: 10417
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 103776201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)