Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F11
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 493 PPPPAXGXXKXGPRXGPPXPXP 428
           PP P+ G    GP   PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 458 TPXGPPXPXPPFXGGXPXPXPPPXXP 381
           +P  P    PP     P P  PP  P
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -1

Query: 606 PGSXXXGXFXXGGXGGGXPXXRXXPXGGGG 517
           PGS   G    G  GG          GGGG
Sbjct: 22  PGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.156    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,545
Number of Sequences: 438
Number of extensions: 6275
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)