Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F10
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   1.6  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   2.2  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   5.0  
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    26   8.7  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 525 KRPGTVKRPRLLAFFHRLRPPDEHHKNR--RSSQRWRNPTGL*KI 653
           K+P T  +P  +  F+ L   D  HK+R  R  +R R+ TG+ KI
Sbjct: 97  KKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGIKKI 141


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/75 (25%), Positives = 28/75 (37%)
 Frame = +3

Query: 654 PGRFPPWKLPSXRSPCSDPAALPDTCSAFLPSGSVAAFS*LTPXVXGXSXXXXXGSVXPP 833
           P   PPW+ P+ +S       +P   + F+P G+ A     T    G       G+   P
Sbjct: 457 PSSLPPWQQPTQQSAVQPSNLVPSQNAPFIP-GTSAPLPPTTFAPPGVPLPPIPGAPGMP 515

Query: 834 KLGXGXAXNPPLXKP 878
            L       PP+  P
Sbjct: 516 NLNMS---QPPMVPP 527


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 652 YQGVFPXGSSLRCALLVPTLPPYRIPVPPFSLREA 756
           Y GV P  ++   AL  P   P+R P   FS+  A
Sbjct: 413 YTGVTPSHAANGSALAAPQATPFRTPRDTFSINAA 447


>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 727 PVPPFSLREAWRLSHSSRR 783
           P+ P  LREA+RLS  +RR
Sbjct: 168 PLSPDHLREAYRLSRQNRR 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,658
Number of Sequences: 5004
Number of extensions: 56579
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)