Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F09
         (927 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    38   1e-04
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    38   1e-04
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    35   8e-04

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
           G L C  N  C+   L C+G PDC D SDE  C
Sbjct: 112 GKLSCG-NGECIDKELFCNGKPDCKDESDENSC 143


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
           G L C  N  C+   L C+G PDC D SDE  C
Sbjct: 119 GKLSCG-NGECIDKELFCNGKPDCKDESDENSC 150


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
           G+L C  +  C+   L C+G  DC DGSDE  C
Sbjct: 120 GSLACG-DGNCIERGLFCNGEKDCSDGSDENTC 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,995
Number of Sequences: 336
Number of extensions: 2880
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)