Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_F09
(927 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 52 5e-07
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 50 4e-06
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 4e-06
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 45 8e-05
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 45 8e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 44 2e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 42 5e-04
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 42 0.001
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 41 0.001
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 41 0.002
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 40 0.003
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 39 0.007
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 38 0.009
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 38 0.015
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 37 0.020
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 37 0.027
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 37 0.027
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 36 0.061
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 35 0.081
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 35 0.11
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 35 0.11
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 35 0.11
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 33 0.25
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 33 0.33
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 32 0.76
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 31 1.7
SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0) 31 1.7
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 30 2.3
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 30 3.1
SB_19392| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 30 3.1
SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15) 29 4.0
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) 29 4.0
SB_48107| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 29 7.1
SB_13074| Best HMM Match : Fz (HMM E-Value=5.3e-17) 29 7.1
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 28 9.3
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083) 28 9.3
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 52.4 bits (120), Expect = 5e-07
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +2
Query: 320 KSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLSS 460
K+ G+ +C + +C+P + RCDG DCPD SDE GC ++R+ SS
Sbjct: 88 KNCGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGC--VNRTCSS 132
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDC-PDGSDEAGCLWIS 445
N +C+P + +CDG DC P G DE GC I+
Sbjct: 138 NNQCVPLSWKCDGEKDCRPGGFDEEGCAHIA 168
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 49.6 bits (113), Expect = 4e-06
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 332 AGALRCALNERCLPPNLRCDGNPDCPDGSDE--AGCLWISRSLSSWQ 466
AG RCA RC+P RCDG DC DGSDE A C I+ S +++
Sbjct: 3088 AGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCTAITCSAETFR 3134
Score = 48.0 bits (109), Expect = 1e-05
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+ A RC + RC+P +CDG DC DGSDE GC
Sbjct: 3127 TCSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGC 3163
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC-LWISRS 451
+ A RCA N +C P + CDG DC DGSDE GC +++ RS
Sbjct: 909 NCSASMFRCA-NGQCKPRDWVCDGFDDCGDGSDEKGCGMFVMRS 951
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDC--PDGSDEAGC 433
S A RC + +C+P + RCDG+ DC PD SDEA C
Sbjct: 866 SCRASEFRCQASRKCIPLSWRCDGDYDCLAPDLSDEANC 904
Score = 41.5 bits (93), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 320 KSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEA-GC 433
+S G RC+ RC+ + CDG DCPD SDE GC
Sbjct: 1125 ESCGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGC 1163
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+CA N RC+ RCDG DC DGSDE+ C
Sbjct: 94 QCA-NGRCINKKWRCDGMKDCADGSDESTC 122
Score = 39.5 bits (88), Expect = 0.004
Identities = 25/85 (29%), Positives = 31/85 (36%)
Frame = +2
Query: 179 PDYFGIGSCAPQPDCHSDLQRLALSRRACDSIPXXXXXXXXXXXXYCKSAGAGALRCALN 358
PD + C P +D ++ CD IP RC N
Sbjct: 2958 PDSCPVRVCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRCD-N 3016
Query: 359 ERCLPPNLRCDGNPDCPDGSDEAGC 433
RC+ + CDG DC DGSDE C
Sbjct: 3017 FRCVYRSRVCDGIDDCRDGSDERNC 3041
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 353 LNERCLPPNLRCDGNPDCPDGSDEAGC 433
LN RC+P CD N DC D SDE C
Sbjct: 3338 LNRRCVPVRAVCDSNDDCGDISDELQC 3364
Score = 36.7 bits (81), Expect = 0.027
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+C + RC+P CD + DC D SDE C
Sbjct: 1053 QCETSSRCIPLRFVCDADDDCGDRSDERNC 1082
Score = 36.7 bits (81), Expect = 0.027
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDE 424
G ++C C+P + CDG+ DC DG DE
Sbjct: 2290 GQVKCGSKNLCIPSSWLCDGSDDCGDGWDE 2319
Score = 36.3 bits (80), Expect = 0.035
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEA 427
C RC+P CDG DC DGSDE+
Sbjct: 2421 CRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 35.9 bits (79), Expect = 0.046
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDE 424
RC E C+P + RCDG+ DC D SDE
Sbjct: 2334 RCTSGE-CVPASWRCDGDNDCTDKSDE 2359
Score = 35.1 bits (77), Expect = 0.081
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDE 424
N RC+ RCDG DC DGSDE
Sbjct: 2935 NYRCISRLWRCDGEDDCGDGSDE 2957
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLSSWQRENS 478
CA C+ CDG DC D SDE C S W+ N+
Sbjct: 1094 CANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNT 1137
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 332 AGALRCALNERCLPPNLRCDGNPDCPDGSDE---AGCL-WISRS 451
AG C N C+ +CDG DC D SDE AGC W R+
Sbjct: 827 AGKFTCK-NGHCISLRWKCDGENDCVDNSDEDEYAGCAEWSCRA 869
Score = 34.3 bits (75), Expect = 0.14
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDE 424
GA N RC+ L CDG+ DC D SDE
Sbjct: 2372 GAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 34.3 bits (75), Expect = 0.14
Identities = 23/77 (29%), Positives = 30/77 (38%)
Frame = +2
Query: 194 IGSCAPQPDCHSDLQRLALSRRACDSIPXXXXXXXXXXXXYCKSAGAGALRCALNERCLP 373
+ CAP D R R CD I + + A RC + RC+
Sbjct: 3004 VNQCAPY-HFRCDNFRCVYRSRVCDGIDDCRDGSDERNC-HVTTCTADQFRCP-SGRCIS 3060
Query: 374 PNLRCDGNPDCPDGSDE 424
+ CDG+ DC D SDE
Sbjct: 3061 RDWLCDGDNDCGDSSDE 3077
Score = 33.5 bits (73), Expect = 0.25
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGC 433
C+ + CDG+ DC DGSDE C
Sbjct: 2508 CIANSSVCDGDTDCADGSDEKDC 2530
Score = 33.1 bits (72), Expect = 0.33
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
RCA + RC+ + CD DC DGSDE C+
Sbjct: 3174 RCA-SGRCISASWVCDHVNDCGDGSDEQQCI 3203
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N RC+ + CDG DC D SDE C
Sbjct: 2257 NGRCVSYDFLCDGEDDCGDFSDELRC 2282
Score = 32.3 bits (70), Expect = 0.57
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGCL 436
C+ RCD DC DGSDE C+
Sbjct: 2469 CITREWRCDHQDDCGDGSDEQQCV 2492
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDE 424
CA N C+P + CDG DC D SDE
Sbjct: 54 CA-NGMCIPKSAVCDGENDCGDMSDE 78
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAG-CL 436
C RC+P + CDG DC D DE CL
Sbjct: 134 CIGTSRCIPLSRVCDGTNDCGDNYDEGSHCL 164
Score = 31.5 bits (68), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 362 RCLPPNLRCDGNPDCPDGSDEAGCLWIS 445
+C+ + CDG+ DC DGSDE+ + S
Sbjct: 2179 QCVRKSFVCDGDNDCHDGSDESSLVCAS 2206
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N RC+ CD DC D SDEA C
Sbjct: 2218 NGRCINAKWVCDRENDCGDNSDEARC 2243
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAG 430
C+ +CDG DC D SDE G
Sbjct: 3219 CIARAWKCDGMMDCADASDEKG 3240
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEA 427
RC N +C+P CDG C D SDEA
Sbjct: 3293 RCD-NNKCIPKWNVCDGVYHCTDKSDEA 3319
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 49.6 bits (113), Expect = 4e-06
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 329 GAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC--LWISRSLSSWQRENSE 481
GAG RC N+RC+P N CD + DC DGSDE GC ++ R+L +N +
Sbjct: 161 GAGRYRCD-NDRCIPRNWVCDRDNDCGDGSDETGCRGVYGKRTLKKKDDQNKQ 212
Score = 37.9 bits (84), Expect = 0.012
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C S + RC N RC+ + CD + DC DGSDE C
Sbjct: 115 CGSCSSSQFRCR-NGRCVSRSWVCDKDNDCGDGSDEVQC 152
Score = 35.9 bits (79), Expect = 0.046
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 383 RCDGNPDCPDGSDEAGC 433
RCDG DC DGSDE GC
Sbjct: 99 RCDGENDCRDGSDETGC 115
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 45.2 bits (102), Expect = 8e-05
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2
Query: 329 GAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
GAG RC N+RC+P N CD DC D SDE+GC
Sbjct: 43 GAGQYRCD-NDRCIPLNWVCDRLNDCHDNSDESGC 76
Score = 34.7 bits (76), Expect = 0.11
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
RC N C+ N CD + DC DGSDE C
Sbjct: 6 RCR-NGNCINRNYVCDKDNDCGDGSDEVAC 34
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 45.2 bits (102), Expect = 8e-05
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2
Query: 329 GAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
GAG RC N+RC+P N CD DC D SDE+GC
Sbjct: 177 GAGQYRCD-NDRCIPLNWVCDRLNDCHDNSDESGC 210
Score = 39.5 bits (88), Expect = 0.004
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N C+ N +CDG+ DC DG+DE GC
Sbjct: 106 NGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C G+ RC N C+ N CD + DC DGSDE C
Sbjct: 131 CGKCGSTQFRCR-NGNCINRNYVCDKDNDCGDGSDEVAC 168
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGCLWISR 448
CA + RC+P RCD DC DGSDE C ++R
Sbjct: 429 CAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTR 462
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
CA N +C+P + RCDG DC D SDE+GC
Sbjct: 350 CA-NSQCVPNSFRCDGENDCGDRSDESGC 377
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +2
Query: 326 AGAGALRCA------LNERCLPPNLRCDGNPDCPDGSDEAGC 433
AG G + C+ N++C+P +CDG +C DGSDE C
Sbjct: 503 AGCGTIGCSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMC 544
Score = 38.3 bits (85), Expect = 0.009
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
CA C+ CDG DC DGSDEAGC
Sbjct: 477 CADGNGCVHRRWICDGERDCLDGSDEAGC 505
Score = 36.3 bits (80), Expect = 0.035
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
+ A RC + RC+ RCD DC D SDE GC+
Sbjct: 382 TCSANEFRCD-DGRCITSTFRCDREFDCTDRSDERGCV 418
Score = 33.9 bits (74), Expect = 0.19
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
RC + C+ + CD P CP G DE C
Sbjct: 578 RCGSSTICIANSKVCDATPHCPHGEDERNC 607
Score = 33.1 bits (72), Expect = 0.33
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N +C+ + CDG DC D SDE C
Sbjct: 139 NGQCIKASWLCDGASDCQDNSDEMNC 164
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N RC+ CDG DC D SDE C
Sbjct: 310 NGRCVLKEWLCDGMDDCGDSSDEDNC 335
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 44.0 bits (99), Expect = 2e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C ++++CL L+CDG PDC D SDEA C
Sbjct: 53 CPVSQKCLNRTLQCDGKPDCSDYSDEAHC 81
Score = 35.1 bits (77), Expect = 0.081
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+C ++ C+ + CDG PDC D SDE C
Sbjct: 12 QCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 44.0 bits (99), Expect = 2e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C ++++CL L+CDG PDC D SDEA C
Sbjct: 1350 CPVSQKCLNRTLQCDGKPDCSDYSDEAHC 1378
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C+ ++RC+ +CDG DC DG DE GC
Sbjct: 345 CSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 35.1 bits (77), Expect = 0.081
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+C ++ C+ + CDG PDC D SDE C
Sbjct: 1309 QCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 32.7 bits (71), Expect = 0.43
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 320 KSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRS 451
++ A +RC + C+ CD DC DG+DE L SR+
Sbjct: 118 RNCTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDEDPTLCASRT 161
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 329 GAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC-LWISRSLSSWQRENSETTLG 493
G G C + C+P LRC+G DC D SDE C + + S+ Q +T LG
Sbjct: 727 GNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLG 782
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 41.9 bits (94), Expect = 7e-04
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGCLWIS---RSLSSWQRENSE 481
C+PP CDG DC D SDE+ C WI+ +++++W+++ E
Sbjct: 371 CIPPQWICDGKDDCGDRSDES-CSWINDCKKTVNAWEKKFGE 411
Score = 33.9 bits (74), Expect = 0.19
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 359 ERCLPPNLRCDGNPDCPDGSDEAGC 433
++C+ + +CDG P+C D SDE C
Sbjct: 283 KQCIDISYKCDGKPECADHSDENDC 307
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 41.5 bits (93), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 320 KSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEA-GC 433
+S G RC+ RC+ + CDG DCPD SDE GC
Sbjct: 152 ESCGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGC 190
Score = 36.7 bits (81), Expect = 0.027
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+C + RC+P CD + DC D SDE C
Sbjct: 80 QCETSSRCIPLRFVCDADDDCGDRSDERNC 109
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLSSWQRENS 478
CA C+ CDG DC D SDE C S W+ N+
Sbjct: 121 CANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNT 164
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
S G+G +C N +C+ NL CDG+ C DGSDE C
Sbjct: 90 SCGSGEFQCD-NGKCIRKNLYCDGDFACVDGSDETRC 125
Score = 29.5 bits (63), Expect = 4.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGC 433
C+ CDG DC D +DE C
Sbjct: 139 CIMGTQLCDGKKDCTDNTDEKNC 161
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 40.7 bits (91), Expect = 0.002
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
G C +E C+P L+CDG+ DC D SDE C
Sbjct: 26 GQFECTSSE-CIPDVLKCDGSEDCADSSDEINC 57
Score = 34.3 bits (75), Expect = 0.14
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C + C+P + CDG DC G+DE C
Sbjct: 70 CLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 39.9 bits (89), Expect = 0.003
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+CA N RC+ + RCDG DC D SDE GC
Sbjct: 155 QCA-NRRCVYNSQRCDGQNDCGDWSDETGC 183
Score = 37.5 bits (83), Expect = 0.015
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDE 424
S + RC N RC+P + RCDG+ DC D SDE
Sbjct: 9 SCPSNRFRCN-NGRCIPMSWRCDGDNDCGDMSDE 41
Score = 37.5 bits (83), Expect = 0.015
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 320 KSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+S +G C+ N RC+ + CD + DC DGSDE C
Sbjct: 48 RSCNSGQFSCS-NGRCISRSWVCDRDNDCGDGSDERNC 84
Score = 34.7 bits (76), Expect = 0.11
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 353 LNERCLPPNLRCDGNPDCPDGSDEAGC 433
LN RC+ L CDG DC D SDE C
Sbjct: 111 LNGRCVFYRLVCDGVDDCGDSSDEMSC 137
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 371 PPNLRCDGNPDCPDGSDEAGC 433
P RCDG+ DC D +DE C
Sbjct: 280 PDVQRCDGSYDCKDYTDEFNC 300
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 341 LRCALNER--CLPPNLRCDGNPDCPDGSDE 424
+RC N C+ + C+G DCPD DE
Sbjct: 197 VRCFYNSSGLCISTSWLCNGRVDCPDAWDE 226
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +2
Query: 332 AGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
AG RCA N RC+ L CD + DC D SDE GC
Sbjct: 7 AGDFRCA-NGRCISGALVCDLDDDCGDESDERGC 39
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 38.7 bits (86), Expect = 0.007
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLSSWQREN 475
G +C N +C+P + +CD + DC D SDE C + + + S ++ +N
Sbjct: 191 GQFKCG-NGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDN 236
Score = 33.1 bits (72), Expect = 0.33
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N RC+ RCD + DC D SDE C
Sbjct: 236 NGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 38.3 bits (85), Expect = 0.009
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDE 424
G +C RC+P + CDG DC DG DE
Sbjct: 214 GEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 37.9 bits (84), Expect = 0.012
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N+ C+P CDG+ DC DGSDE C
Sbjct: 30 NKLCVPRTWLCDGDNDCHDGSDEKNC 55
Score = 31.9 bits (69), Expect = 0.76
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +2
Query: 317 CKSAGAGALRCAL------NERCLPPNLRCDGNPDCPDGSDEA 427
C+S ++C + N C+P + CDG DC D SDE+
Sbjct: 55 CESRRMRTVKCGIEEFDCGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 37.5 bits (83), Expect = 0.015
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+ A RC N RC+ RCD DC D SDE GC
Sbjct: 3 TCSATEFRCN-NGRCITRAFRCDDEDDCLDNSDEQGC 38
Score = 35.9 bits (79), Expect = 0.046
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
RC C+ CDG DC DGSDE GC
Sbjct: 100 RCDNGSGCVDRMKICDGMRDCADGSDERGC 129
Score = 34.3 bits (75), Expect = 0.14
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
+C + +C+ + CDG DC G DE C+
Sbjct: 49 QCGTSRKCIRKSKICDGKSDCSGGEDEKNCV 79
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
CA ++RC+ RCDG+ DC D SDE C
Sbjct: 558 CA-DKRCILSRWRCDGDRDCADNSDEINC 585
Score = 28.7 bits (61), Expect = 7.1
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = +2
Query: 200 SCAPQPDCHSDLQRLALSRRACDS----IPXXXXXXXXXXXXYCKSAGAGALRCALNERC 367
+C P +D +R LSR CD YCKS+ +C+ E C
Sbjct: 550 TCRPNEFTCAD-KRCILSRWRCDGDRDCADNSDEINCPNSSQYCKSS---EYQCSTGE-C 604
Query: 368 LPPNLRCDGNPDCPDGSDE 424
+ + CDG DC + SDE
Sbjct: 605 IHKSWVCDGEFDCLNKSDE 623
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 37.1 bits (82), Expect = 0.020
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
G RC + C+ +LRCD DC DG DEA C
Sbjct: 2249 GLFRCT-DGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 37.1 bits (82), Expect = 0.020
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C + +C+P CD N DC DGSDE C
Sbjct: 3432 CVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 36.7 bits (81), Expect = 0.027
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC-LWISR-----SLSSWQRENS 478
C + AG ++C N C+ + CD DC D SDE C L+ +R L +WQ+
Sbjct: 3201 CSTPSAGYVKCT-NGGCIQKSKLCDFTDDCGDNSDEGRCALYPARCNFETDLCNWQQLTD 3259
Query: 479 ETT 487
+ T
Sbjct: 3260 DDT 3262
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 332 AGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+G RC+ N +C+ CD DC DGSDEA C
Sbjct: 2552 SGEHRCS-NGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 329 GAGALRCAL---NERCLPPNLRCDGNPDCPDGSDEA 427
GAG +C N+ CL +CD PDC DG DEA
Sbjct: 2999 GAGKFQCTDLTGNKVCLANTKKCDFVPDCSDGIDEA 3034
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
G RCA C+ CD DC D SDE C
Sbjct: 2096 GQFRCARGS-CIDTGRVCDFTDDCGDNSDENNC 2127
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGCLWISRSLSS 460
C+ CD + +C DGSDE C+ S SS
Sbjct: 3862 CILSTQVCDFSKNCKDGSDEKNCVQPSCDFSS 3893
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDE 424
S + RC + C+ + +CD DC DGS+E
Sbjct: 2782 SCSSNQFRCD-SGHCISSSSKCDFETDCCDGSEE 2814
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
CA ++RC+ RCDG+ DC D SDE C
Sbjct: 713 CA-DKRCILSRWRCDGDRDCADNSDEINC 740
Score = 36.7 bits (81), Expect = 0.027
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C ++C+ +CDG DC D SDE C
Sbjct: 593 CVNTQKCIAATWKCDGEDDCGDNSDEINC 621
Score = 34.7 bits (76), Expect = 0.11
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDE 424
RC N RC+P CD + DC DGSDE
Sbjct: 633 RCT-NGRCIPRRWVCDKDDDCHDGSDE 658
Score = 34.7 bits (76), Expect = 0.11
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDE 424
G +C +++C+P + CDG+ DC + +DE
Sbjct: 792 GEFQCGSSKQCIPESKVCDGSVDCTNSADE 821
Score = 31.5 bits (68), Expect = 1.0
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 200 SCAPQPDCHSDLQRLALSRRACDS----IPXXXXXXXXXXXXYCKSAGAGALRCALNERC 367
+C P +D +R LSR CD YCKS+ +C+ E C
Sbjct: 705 TCRPNEFTCAD-KRCILSRWRCDGDRDCADNSDEINCPNSSQYCKSS---EYQCSTGE-C 759
Query: 368 LPPNLRCDGNPDCPDGSDEAGC 433
+ + CDG DC + SDE C
Sbjct: 760 IHKSWVCDGEFDCLNKSDENNC 781
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N C+ CD + DC DG+DE C
Sbjct: 676 NGICVVKRWVCDQDDDCGDGTDELNC 701
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 36.7 bits (81), Expect = 0.027
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = +2
Query: 341 LRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
LRC N RC CDG DC DGSDE C
Sbjct: 229 LRCD-NGRCEDKRWWCDGQDDCNDGSDEKNC 258
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 36.7 bits (81), Expect = 0.027
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGC 433
C+ N C+G DCPD SDE GC
Sbjct: 16 CIDRNEHCNGKIDCPDASDEKGC 38
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 36.3 bits (80), Expect = 0.035
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C RC N +C+ + RCD +C DGSDE GC
Sbjct: 1343 CPPCKENQFRCD-NGQCIDGDPRCDKYKNCTDGSDELGC 1380
Score = 34.3 bits (75), Expect = 0.14
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 341 LRCA-LNERCLPPNLRCDGNPDCPDGSDEAGC 433
+ CA + C+P RCDG DC D SDE C
Sbjct: 1312 ISCASMKAICIPKMWRCDGMLDCTDKSDEEDC 1343
Score = 32.7 bits (71), Expect = 0.43
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C + RC +C+ +CD DC D SDE GC
Sbjct: 1380 CATCEPNFFRCNTG-KCISARWQCDQLDDCGDNSDEIGC 1417
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 35.5 bits (78), Expect = 0.061
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISR 448
G C +CL + CD DC DGSDE C SR
Sbjct: 91 GQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISSR 128
Score = 34.7 bits (76), Expect = 0.11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
S A RC ++C+P CD DC D DE C+
Sbjct: 22 SCAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNCI 59
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 35.1 bits (77), Expect = 0.081
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 335 GALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
G C +CL + CD DC DGSDE C
Sbjct: 904 GQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNC 936
Score = 34.7 bits (76), Expect = 0.11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
S A RC ++C+P CD DC D DE C+
Sbjct: 835 SCAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNCI 872
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 329 GAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
G+ C +CLP CD DC D DE C
Sbjct: 948 GSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHNC 982
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 34.7 bits (76), Expect = 0.11
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+C E C+ +L CD N DC DGSDE C
Sbjct: 710 KCRSGE-CISLDLLCDFNKDCLDGSDEENC 738
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
R A +C+ CD DC DG DE GC
Sbjct: 490 RNATLAKCISHGQLCDFVDDCGDGWDETGC 519
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C+SA +C + +C+ P+ C+G DC DGSDE C
Sbjct: 74 CRSA---EFKCP-DGKCVHPSKFCNGESDCTDGSDEWSC 108
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 353 LNERCLPPNLRCDGNPDCPDGSDEAGC 433
LN C+ +RCDG+ C D SDE C
Sbjct: 46 LNGMCVGQEVRCDGDYACVDHSDERNC 72
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDE 424
C ++ + CA + C+ +L C+G DC DGSDE
Sbjct: 108 CDNSCSSRHACA-DGTCVTWSLTCNGVSDCQDGSDE 142
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
C+SA +C + +C+ P+ C+G DC DGSDE C
Sbjct: 74 CRSA---EFKCP-DGKCVHPSKFCNGESDCTDGSDEWSC 108
Score = 33.9 bits (74), Expect = 0.19
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 353 LNERCLPPNLRCDGNPDCPDGSDEAGC 433
LN C+ LRCDG+ C D SDE C
Sbjct: 46 LNGMCVGQELRCDGDYACVDHSDERNC 72
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 317 CKSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDE 424
C ++ + CA + C+ +L C+G DC DGSDE
Sbjct: 108 CDNSCSSRHACA-DGTCVTWSLTCNGVSDCQDGSDE 142
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 33.5 bits (73), Expect = 0.25
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGCLWISRSLS 457
C+ + RCDG+ +C D SDE GC + L+
Sbjct: 221 CISGSSRCDGDYNCMDRSDEDGCKCFTNELT 251
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 33.1 bits (72), Expect = 0.33
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPD-CPDGSDEAGC 433
N C+ RC+G D C DGSDE+GC
Sbjct: 668 NGECVTKTSRCNGMRDSCVDGSDESGC 694
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 323 SAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
+ G +C+ E C+ CDG DC DG DE C
Sbjct: 695 TCGLHEFQCSSGE-CIEVATFCDGKKDCGDGFDETHC 730
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 33.1 bits (72), Expect = 0.33
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 353 LNERCLPPNLRCDGNPDCPDGSDEAGCLWIS 445
+N +C+ +L CDG+ C D SDEA C +S
Sbjct: 1127 VNGQCVSRDLICDGDNACLDFSDEANCKCLS 1157
Score = 31.9 bits (69), Expect = 0.76
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAG 430
C+ L CDG DC DG+DE G
Sbjct: 1205 CVKWPLTCDGKKDCEDGTDEPG 1226
Score = 29.5 bits (63), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 386 CDGNPDCPDGSDEAGC 433
CDG DC D SDE+ C
Sbjct: 1174 CDGTDDCKDASDESRC 1189
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 33.1 bits (72), Expect = 0.33
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N +C+ L CDG+ C DGSDE C
Sbjct: 192 NGQCVKRGLLCDGDKACLDGSDEKHC 217
Score = 31.9 bits (69), Expect = 0.76
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGCLWISRSLSS 460
C+P C+ DC D +DE C + + SL++
Sbjct: 231 CIPTTALCNNENDCSDNADERNCQYANCSLNN 262
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 32.7 bits (71), Expect = 0.43
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEA 427
CA + C+P CDG+ DC D SDEA
Sbjct: 223 CASGD-CVPLTSVCDGSADCSDSSDEA 248
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 31.9 bits (69), Expect = 0.76
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N +C+ +C+ DC DGSDE C
Sbjct: 401 NRQCIDDFKQCNNRQDCRDGSDEISC 426
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLS 457
+CA + C+ + RCD + +C D SDE GC + L+
Sbjct: 237 QCA-SGHCISGSSRCDSDYNCMDRSDEDGCKCFTNELT 273
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.76
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 365 CLPPNLRCDGNPDCPDGSDEAGCLWISRSLS 457
C+ + RCD + +C D SDE GC + L+
Sbjct: 287 CISGSSRCDSDYNCMDSSDEDGCKCFTNELT 317
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 341 LRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
L C+ + RC+P CDG DC G DE C
Sbjct: 316 LTCS-SGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLS 457
+CA + C+ + RCD + +C D SDE GC + L+
Sbjct: 1110 QCA-SGHCISGSSRCDSDYNCMDRSDEDGCKCFTNELT 1146
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 341 LRCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
L C+ + RC+P CDG DC G DE C+
Sbjct: 1145 LTCS-SGRCVPSINLCDGVKDCEHGLDELRCV 1175
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 344 RCALNERCLPPNLRCDGNPDCPDGSDEAGCLWISRSLS 457
+CA + C+ + RCD + +C D SDE GC + L+
Sbjct: 200 QCA-SGHCISGSSRCDSDYNCMDRSDEDGCKCFTNELT 236
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 341 LRCALNERCLPPNLRCDGNPDCPDGSDEAGC 433
L C+ + RC+P CDG DC G DE C
Sbjct: 235 LTCS-SGRCVPSINLCDGVKDCEHGLDELRC 264
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 356 NERCLPPNLRCDGNPDCPDGSDEAGC 433
N RC+ CD DC D SDE C
Sbjct: 16 NGRCISATWVCDTENDCGDNSDEMNC 41
>SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
Length = 1009
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +2
Query: 50 MLQPRCEDNHV--VRPCRSYCRAFHEGCGARLPERLKAHF--DCARFPDYFG-IGSC--A 208
+L P C+D PCR C F + C +RLP+ C+ P+ G C
Sbjct: 195 VLAPNCKDGDPKPFLPCRRVCSEFLKRCNSRLPDYFVDLMIGMCSLLPNSTADTGMCYEP 254
Query: 209 PQPDCHSDLQRLALSR 256
PQ D H ++ L +R
Sbjct: 255 PQFDKHYNVTNLVATR 270
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 320 KSAGAGALRCALNERCLPPNLRCDGNPDCPDGSDEAGCL 436
+SA +C N+ + +CDG DC D SDE C+
Sbjct: 415 ESANELLFKCD-NDNYIQCQWKCDGTDDCGDHSDEDNCV 452
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 215 VVEHKIRSRNSLEIEHSRSVLLVVQVGEHRSLREKLDSRS 96
V + ++R + + H+R V + V +HR+L+E+ S+S
Sbjct: 1447 VKDEQVRGSRATQTSHTRDVAVNVPTPKHRALKERKPSKS 1486
>SB_19392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 50 MLQPRCEDNHV--VRPCRSYCRAFHEGCGARLPE 145
+L P C+D PCR C F + C +RLP+
Sbjct: 87 VLAPNCKDGDPKPFLPCRRVCSEFLKRCNSRLPD 120
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 353 LNERCLPPNLRCDGNPDCPDGSDEAG----CLWISRSLSSWQRENSETTLGAVRNRAGYA 520
L +RC PP LR P C G D L++ L+ ++E E+ L A R ++
Sbjct: 1099 LTKRCRPPALRLRDKPACKHGLDNRALRTVILYVRLELTGAEQERGESHLLAPPRRPLFS 1158
Query: 521 L--WA 529
+ WA
Sbjct: 1159 VFRWA 1163
>SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15)
Length = 994
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 29 NSLRFLKMLQPRCEDNHV---VRPCRSYCRAFHEGCGARLPERLKAHF 163
+ L M P+C+D H V PCR C F + C A + RL A F
Sbjct: 373 SELVLCSMYVPQCQDEHFPKPVLPCRPVCYQFVKDCHAYI--RLAAIF 418
>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
Length = 172
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 293 LRRRNQEYYHMPAATKLAVVNHYDNLVVEHKIRSRNSLEIEHS 165
++RR E+ K V+ Y+N++ E + + LEI HS
Sbjct: 118 IQRREIEFLRKELRRKDEVIREYENIIKEREDMEKRELEILHS 160
>SB_48107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 28.7 bits (61), Expect = 7.1
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Frame = +2
Query: 35 LRFL--KMLQPRCEDNHV--VRPCRSYCRAFHEGC-------GARLPERLKAHFDCARFP 181
LRF M P CE ++ + PCRS C GC G PER+K C FP
Sbjct: 78 LRFFLCSMYAPLCEKHYDKDLPPCRSVCERARTGCAPLMRKYGFSWPERMK----CENFP 133
Query: 182 D 184
+
Sbjct: 134 E 134
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 28.7 bits (61), Expect = 7.1
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -2
Query: 248 KLAVVNHYDNLVVEHKIRSRNSLEIEHSRSVLLVVQVGEHRSLREKLDSRSDTVALHDYL 69
KL + H+++ + H+ S+N EI S + L+ + + + + K DSR+ + + YL
Sbjct: 211 KLRLKYHFEDRIAFHQQPSKNKPEIIFSSQISLIDAL--NAAAQSKSDSRTYLIDVARYL 268
Query: 68 RNEAVAFSKILR 33
R S + R
Sbjct: 269 RRSKQLVSLLNR 280
>SB_13074| Best HMM Match : Fz (HMM E-Value=5.3e-17)
Length = 377
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 KMLQPRCEDNHVVRPCRSYCRAFHEGCGARLPERLKAHF-DCARFPDYFGIGSCAPQPDC 223
++ +P+C++ V PCR C A + C R F C + P+ G+C D
Sbjct: 102 QIYKPKCKNGSVELPCREQCFATRKPCSVVESYRRWPEFLRCDKLPE----GNCNGTVDA 157
Query: 224 HS 229
+S
Sbjct: 158 NS 159
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 347 CALNERCLPPNLRCDGNPDCPDGSDEAGC 433
CA N +C+ + C+ DC D SDE C
Sbjct: 152 CA-NSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
Length = 1466
Score = 28.3 bits (60), Expect = 9.3
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 567 HGAAHIFPYLPRSAQRAYPARFLTAPNVVSEFSRCH---EDRDRE 442
HG H++ Y A YP+ T P V + SRCH E DRE
Sbjct: 422 HGPCHLYTYDKTLADH-YPS---TLPGVFPDISRCHARCEKFDRE 462
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,109,175
Number of Sequences: 59808
Number of extensions: 389404
Number of successful extensions: 1268
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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