Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F09
         (927 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69170.2 68414.m07914 squamosa promoter-binding protein-like ...    29   3.3  
At1g69170.1 68414.m07913 squamosa promoter-binding protein-like ...    29   3.3  
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ...    29   5.8  
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr...    29   5.8  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    28   7.6  
At1g66700.3 68414.m07582 S-adenosyl-L-methionine:carboxyl methyl...    28   7.6  

>At1g69170.2 68414.m07914 squamosa promoter-binding protein-like 6
           (SPL6) identical to squamosa promoter binding
           protein-like 6 [Arabidopsis thaliana] GI:5931683;
           contains Pfam profile PF03110: SBP domain
          Length = 405

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 326 RSCSTHIRAHQLRRRNQEYYHMPAATKLAVVNHYDNLVVEHKIRSRNSLEIEHS--RSVL 153
           RSC   +  H  RRR   +Y +P      +    D  VV +K    +SL +  S   S+L
Sbjct: 182 RSCRRRLAGHNERRRKPAFYFLPGKRHKLLRTSQD--VVGNKFLENSSLVLPESFPGSLL 239

Query: 152 L-VVQVGEHRSLR 117
             V+   +HR+ R
Sbjct: 240 YRVIDEDDHRTSR 252


>At1g69170.1 68414.m07913 squamosa promoter-binding protein-like 6
           (SPL6) identical to squamosa promoter binding
           protein-like 6 [Arabidopsis thaliana] GI:5931683;
           contains Pfam profile PF03110: SBP domain
          Length = 405

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 326 RSCSTHIRAHQLRRRNQEYYHMPAATKLAVVNHYDNLVVEHKIRSRNSLEIEHS--RSVL 153
           RSC   +  H  RRR   +Y +P      +    D  VV +K    +SL +  S   S+L
Sbjct: 182 RSCRRRLAGHNERRRKPAFYFLPGKRHKLLRTSQD--VVGNKFLENSSLVLPESFPGSLL 239

Query: 152 L-VVQVGEHRSLR 117
             V+   +HR+ R
Sbjct: 240 YRVIDEDDHRTSR 252


>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 706

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
 Frame = +2

Query: 83  VRPC-RSY------CRAFHEGCGARLPERLKAHFDCARFPDYFGIGSCAPQPDC 223
           +RPC R+Y      C   H G  AR  +  K H+ C   PD F  GSC     C
Sbjct: 265 IRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPD-FKKGSCKQGDMC 317


>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           light repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
           PF00069: Protein kinase domain and PF00560: Leucine Rich
           Repeat
          Length = 929

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 429 DVCGFLDPCLHGNGKI 476
           DVCG +DPC+  N KI
Sbjct: 830 DVCGIIDPCIASNVKI 845


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +2

Query: 83  VRPC-RSY------CRAFHEGCGARLPERLKAHFDCARFPDYFGIGSC 205
           VRPC R+Y      C   H G  AR  +  K H+ C   PD F  G+C
Sbjct: 269 VRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPD-FRKGAC 315


>At1g66700.3 68414.m07582 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292][Mol Plant Pathol (2001)
           2(3):159-169]
          Length = 259

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 165 TVLDFQTISGSDLV--LHNQIVIVIYN 239
           TV+DF   S SDL   +HN IVIV+YN
Sbjct: 228 TVMDFIGESLSDLAKQVHNLIVIVLYN 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,258
Number of Sequences: 28952
Number of extensions: 258363
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)