Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F08
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679...    28   8.9  

>03_02_0249 -
           6792210-6792215,6794332-6794607,6794692-6795180,
           6795832-6795900,6797316-6797403,6798193-6798224,
           6799277-6799308,6799412-6799646
          Length = 408

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 377 PSCXSSRNARWCCLSPSQILFNTVSS*NTL-SNMINLK 267
           P C  + N  WC L P Q+  +T+S+  +L SN++NL+
Sbjct: 112 PKCDVATNLHWCHLHPFQM--STLSNKVSLSSNLLNLQ 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,709,853
Number of Sequences: 37544
Number of extensions: 135492
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)