Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F07
         (938 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20875.1 68415.m02460 hypothetical protein                          30   2.5  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    29   4.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   5.9  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    29   5.9  
At1g61080.1 68414.m06877 proline-rich family protein                   25   6.3  
At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family pr...    28   7.8  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   7.8  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    25   8.0  

>At2g20875.1 68415.m02460 hypothetical protein
          Length = 104

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 624 SAPLXEHHKNRXSSQRWRNPTGTIKIPG--VPPGSXSCASCXTCRYXTVAFL 773
           S P   H     + +R R    T+++ G  +P  S +C SC  CR   V+F+
Sbjct: 27  SHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFV 78


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -3

Query: 429 RPXXKPPXPGXWPIH*XXXKPPTPPPXPXTXNXXXCCC 316
           R    PP P           PP PPP P       CCC
Sbjct: 51  RAPLPPPPPPAMRRRVLPRPPPPPPPLPMFDAEVLCCC 88


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 426 PXXKPPXPGXWPIH*XXXKPPTPPPXP 346
           P   PP P   P++     PP PPP P
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPP 477


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 426 PXXKPPXPGXWPIH*XXXKPPTPPPXP 346
           P   PP P   P H     PP PPP P
Sbjct: 27  PSLPPPVPPPPPSHQPYSYPPPPPPPP 53


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 25.0 bits (52), Expect(2) = 6.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 414 PPXPGXWPIH*XXXKPPTPPPXP 346
           PP P   P+      PP PPP P
Sbjct: 508 PPPPPPPPLPTTIAAPPPPPPPP 530



 Score = 21.8 bits (44), Expect(2) = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 369 PPTPPPXPXT 340
           PP PPP P T
Sbjct: 536 PPPPPPPPGT 545


>At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family
           protein similar to unknown protein (pir |B71406)
          Length = 234

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +3

Query: 564 KAXKRPGTVKRPRCWRFSIGSAPLXEHHKNRXSSQRWRNPTGTIKIPGVPPGSXSCA 734
           +A K PG+ KR RC   S  S+      + R          G I  PG PP +   A
Sbjct: 54  EASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAA 110


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 426 PXXKPPXPGXWPIH*XXXKPPTPPPXP 346
           P   PP PG  P       PP PPP P
Sbjct: 679 PPPPPPPPGGGPPPPPGGGPPPPPPPP 705


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 25.0 bits (52), Expect(2) = 8.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 429 RPXXKPPXPGXWPIH*XXXKPPTPPPXP 346
           +P   PP P    I      PP PPP P
Sbjct: 638 QPPPPPPPPPPTRIPAAKCAPPPPPPPP 665



 Score = 21.4 bits (43), Expect(2) = 8.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 369 PPTPPPXPXTXN 334
           PP PPP P   N
Sbjct: 680 PPPPPPPPPKAN 691


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,445
Number of Sequences: 28952
Number of extensions: 164507
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)