Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_F06
         (909 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44760.1 68414.m05128 universal stress protein (USP) family p...    29   5.6  
At3g53540.1 68416.m05912 expressed protein                             28   7.4  

>At1g44760.1 68414.m05128 universal stress protein (USP) family
           protein contains Pfam profile PF00582: universal stress
           protein family
          Length = 213

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 316 IVRRETLVPLIHMLSPDAILTPSLDQYTFSGC 221
           +  +  LV L+H++SPD   TPSL Q   S C
Sbjct: 86  LTNKGDLVTLLHVVSPDDEATPSLAQSLGSLC 117


>At3g53540.1 68416.m05912 expressed protein
          Length = 924

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 274 SPDAILTPSLDQYTFSGCGYPSTSQGRLSSAPAVSVGGADNILVDTGA 131
           SP+  +TPSL ++ +   G PS S     +  + S G A++   D+ A
Sbjct: 593 SPEVSITPSLSKFVYMNDGIPSKSASPFKARSSFS-GDANSDTEDSSA 639


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,360
Number of Sequences: 28952
Number of extensions: 349052
Number of successful extensions: 906
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)